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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
164739-164818
(-)
sam-alpha
163473-164667 (-)
Nwi_0139
O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase)
Nwi_0139
Single gene
DOOR ID:
1689299
Nwi_0139
View Structure
2
166253-166313
(+)
fluoride
166459-166840 (+)
Nwi_0141
Putative fluoride ion transporter CrcB
Nwi_0141
Single gene
DOOR ID:
1689301
Nwi_0141
View Structure
3
659926-660005
(+)
sam-alpha
660097-661297 (+)
metX
Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)
Nwi_0585
Operon
DOOR ID:
140248
Nwi_0585
(metX)
,
Nwi_0586
View Structure
4
1419931-1420035
(-)
glycine
1418639-1419791 (-)
gcvT
Glycine cleavage system T protein (0)
Nwi_1286
Operon
DOOR ID:
140381
Nwi_1284,
Nwi_1285,
Nwi_1286
(gcvT)
View Structure
5
1515886-1515933
(-)
mini-ykkC
1512231-1515864 (-)
Pfl01_1338
Pfl01_1338
Operon
DOOR ID:
145057
Pfl01_1336,
Pfl01_1337,
Pfl01_1338
View Structure
6
2411796-2412010
(+)
cobalamin
2412120-2414199 (+)
Nwi_2219
TonB-dependent receptor
Nwi_2219
Single gene
DOOR ID:
1690253
Nwi_2219
View Structure
7
2687699-2687834
(+)
TPP
2688828-2689026 (+)
Nwi_2465
Sulfur carrier protein ThiS
Nwi_2465
Operon
DOOR ID:
140615
Nwi_2464,
Nwi_2465
View Structure
8
3122449-3122671
(-)
cobalamin
3119426-3122336 (-)
Nwi_2888
Ribonucleoside-diphosphate reductase
Nwi_2888
Operon
DOOR ID:
140708
Nwi_2887,
Nwi_2888
View Structure
9
3123579-3123785
(+)
cobalamin
3123917-3126233 (+)
Nwi_2890
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)
Nwi_2890
Single gene
DOOR ID:
1690565
Nwi_2890
View Structure
Genome:
Nitrobacter winogradskyi Nb-255
(
NC_007406.1
);
Phylum:
Alphaproteobacteria
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