Genome: Shigella sonnei Ss046 (NC_007384.1); Phylum: Gammaproteobacteria
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 83295-83394 (-)TPP82280-83264 (-)tbpA

Thiamin-binding periplasmic protein

DOOR ID: 138690
SSON_0072 (thiQ),
SSON_0073 (thiP),
SSON_0074 (tbpA)
View Structure
2 1413782-1413884 (-)yybP-ykoY1413083-1413704 (-)SSON_1339

Probable manganese efflux pump MntP
SSON_1339Single gene

DOOR ID: 1687153
SSON_1339 View Structure
3 2154556-2154731 (-)cobalamin2153900-2154398 (-)SSON_2055

SSON_2055Single gene

DOOR ID: 1687492
SSON_2055 View Structure
4 2257033-2257129 (-)TPP2256209-2256998 (-)thiM

Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)

DOOR ID: 139053
SSON_2149 (yegW),
SSON_2150 (yegX),
SSON_2151 (thiD),
SSON_2152 (thiM)
View Structure
5 3338078-3338226 (-)FMN3337320-3337974 (-)ribB

3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
SSON_3178Single gene

DOOR ID: 1687849
SSON_3178 (ribB) View Structure
6 4382769-4382959 (+)cobalamin4383023-4384868 (+)btuB

Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)

DOOR ID: 139424
SSON_4139 (btuB),
SSON_4140 (murI)
View Structure
7 4414391-4414491 (-)TPP4412414-4414310 (-)thiC

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)

DOOR ID: 139430
SSON_4162 (thiH),
SSON_4163 (thiG),
SSON_4164 (thiS),
SSON_4165 (thiF),
SSON_4166 (thiE),
SSON_4167 (thiC)
View Structure
8 4693869-4693984 (+)Mg sensor4694077-4696774 (+)mgtA

Mg2+ transport ATPase; P-type 1
SSON_4423Single gene

DOOR ID: 1688301
SSON_4423 (mgtA) View Structure