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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
231804-231906
(+)
TPP
232006-233887 (+)
Reut_A0205
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Reut_A0205
Single gene
DOOR ID:
1680089
Reut_A0205
View Structure
2
239471-239552
(+)
SAH
239673-241092 (+)
Reut_A0213
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
Reut_A0213
Single gene
DOOR ID:
1680091
Reut_A0213
View Structure
3
861511-861611
(-)
ZMP-ZTP
860138-861386 (-)
glyA
Serine hydroxymethyltransferase 1 (SHMT 1) (Serine methylase 1)
Reut_A0790
Single gene
DOOR ID:
1680271
Reut_A0790
(glyA)
View Structure
4
1606501-1606547
(-)
mini-ykkC
1602774-1606476 (-)
Reut_B4883
Reut_B4883
Operon
DOOR ID:
137030
Reut_B4882,
Reut_B4883
View Structure
5
2665171-2665370
(+)
yybP-ykoY
2665388-2666009 (+)
Reut_A2431
Probable transmembrane protein
Reut_A2431
Single gene
DOOR ID:
1680831
Reut_A2431
View Structure
6
702171-702421
(+)
cobalamin
702493-704410 (+)
Reut_A0654
TonB-dependent receptor
Reut_A0654
Operon
DOOR ID:
136165
Reut_A0654,
Reut_A0655,
Reut_A0656,
Reut_A0657
View Structure
7
2219778-2219829
(+)
mini-ykkC
2219833-2220034 (+)
Nwi_2028
Nwi_2028
Single gene
DOOR ID:
1690171
Nwi_2028
View Structure
8
3638451-3638539
(+)
glycine
3638780-3639908 (+)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
Reut_A3329
Operon
DOOR ID:
136738
Reut_A3329
(gcvT)
,
Reut_A3330,
Reut_A3331
View Structure
9
3638561-3638685
(+)
glycine
3638780-3639908 (+)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
Reut_A3329
Operon
DOOR ID:
136738
Reut_A3329
(gcvT)
,
Reut_A3330,
Reut_A3331
View Structure
Genome:
Ralstonia eutropha JMP134 chromosome II
(
NC_007347.1
);
Phylum:
Betaproteobacteria
a:10:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_007347.1";i:2;s:38:"Ralstonia eutropha JMP134 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"231804-231906";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"232006-233887";i:10;s:1:"+";i:11;s:10:"Reut_A0205";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:10:"Reut_A0205";i:14;s:11:"Single gene";i:15;s:7:"1680089";i:16;s:10:"Reut_A0205";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_007347.1";i:2;s:38:"Ralstonia eutropha JMP134 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"239471-239552";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:13:"239673-241092";i:10;s:1:"+";i:11;s:10:"Reut_A0213";i:12;s:73:"Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)";i:13;s:10:"Reut_A0213";i:14;s:11:"Single gene";i:15;s:7:"1680091";i:16;s:10:"Reut_A0213";i:17;s:96:"one-carbon metabolic process [GO:0006730]; S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_007347.1";i:2;s:38:"Ralstonia eutropha JMP134 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"861511-861611";i:6;s:1:"-";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:13:"860138-861386";i:10;s:1:"-";i:11;s:4:"glyA";i:12;s:64:"Serine hydroxymethyltransferase 1 (SHMT 1) (Serine methylase 1) ";i:13;s:10:"Reut_A0790";i:14;s:11:"Single gene";i:15;s:7:"1680271";i:16;s:16:"Reut_A0790(glyA)";i:17;s:100:"glycine biosynthetic process from serine [GO:0019264]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_007347.1";i:2;s:38:"Ralstonia eutropha JMP134 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1606501-1606547";i:6;s:1:"-";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"1602774-1606476";i:10;s:1:"-";i:11;s:10:"Reut_B4883";i:12;s:0:"";i:13;s:10:"Reut_B4883";i:14;s:6:"Operon";i:15;s:6:"137030";i:16;s:21:"Reut_B4882;Reut_B4883";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_007347.1";i:2;s:38:"Ralstonia eutropha JMP134 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2665171-2665370";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"2665388-2666009";i:10;s:1:"+";i:11;s:10:"Reut_A2431";i:12;s:30:"Probable transmembrane protein";i:13;s:10:"Reut_A2431";i:14;s:11:"Single gene";i:15;s:7:"1680831";i:16;s:10:"Reut_A2431";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_007347.1";i:2;s:39:"Ralstonia eutropha JMP134 chromosome II";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"702171-702421";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"702493-704410";i:10;s:1:"+";i:11;s:10:"Reut_A0654";i:12;s:23:"TonB-dependent receptor";i:13;s:10:"Reut_A0654";i:14;s:6:"Operon";i:15;s:6:"136165";i:16;s:43:"Reut_A0654;Reut_A0655;Reut_A0656;Reut_A0657";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_007347.1";i:2;s:39:"Ralstonia eutropha JMP134 chromosome II";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2219778-2219829";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"2219833-2220034";i:10;s:1:"+";i:11;s:8:"Nwi_2028";i:12;s:0:"";i:13;s:8:"Nwi_2028";i:14;s:11:"Single gene";i:15;s:7:"1690171";i:16;s:8:"Nwi_2028";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_007347.1";i:2;s:39:"Ralstonia eutropha JMP134 chromosome II";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3638451-3638539";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"3638780-3639908";i:10;s:1:"+";i:11;s:4:"gcvT";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:10:"Reut_A3329";i:14;s:6:"Operon";i:15;s:6:"136738";i:16;s:38:"Reut_A3329(gcvT);Reut_A3330;Reut_A3331";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_007347.1";i:2;s:39:"Ralstonia eutropha JMP134 chromosome II";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3638561-3638685";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"3638780-3639908";i:10;s:1:"+";i:11;s:4:"gcvT";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:10:"Reut_A3329";i:14;s:6:"Operon";i:15;s:6:"136738";i:16;s:38:"Reut_A3329(gcvT);Reut_A3330;Reut_A3331";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}}
