RiboswitchDB

Genome: Candidatus Pelagibacter ubique HTCC1062 (NC_007205.1); Phylum: Alphaproteobacteria

S.No.

Riboswitch Location and Strand

Riboswitch class

Downstream gene location and Strand

Downstream gene name/gene product description

Locus_tag of downstream gene

Single gene/within operon (According to DOOR database)

Operon details (List of genes within operon and their Locus_tag)

Predicted Structure

1

498528-498615 (-)

glycine

496261-498457 (-)

glcB

Malate synthase G

Single gene

DOOR ID: 1673641

SAR11_0510 (glcB)

2

649787-649876 (+)

glycine

649953-651060 (+)

gcvT

Glycine cleavage system protein T2 (0)

Operon

DOOR ID: 132440

SAR11_0666 (gcvT),
SAR11_0667 (gcvH),
SAR11_0668 (gcvP),
SAR11_0669,
SAR11_0670,
SAR11_0672,
SAR11_0673

3

786499-786587 (+)

TPP

788072-789008 (+)

yadG

ATP-binding component of ABC transporter

Operon

DOOR ID: 132471

SAR11_0812 (yadG),
SAR11_0813 (yadH)

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";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_007205.1";i:2;s:40:"Candidatus Pelagibacter ubique HTCC1062 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"649787-649876";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:13:"649953-651060";i:10;s:1:"+";i:11;s:4:"gcvT";i:12;s:38:"Glycine cleavage system protein T2 (0)";i:13;s:10:"SAR11_0666";i:14;s:6:"Operon";i:15;s:6:"132440";i:16;s:94:"SAR11_0666(gcvT);SAR11_0667(gcvH);SAR11_0668(gcvP);SAR11_0669;SAR11_0670;SAR11_0672;SAR11_0673";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure
";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_007205.1";i:2;s:40:"Candidatus Pelagibacter ubique HTCC1062 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"786499-786587";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"788072-789008";i:10;s:1:"+";i:11;s:4:"yadG";i:12;s:40:"ATP-binding component of ABC transporter";i:13;s:10:"SAR11_0812";i:14;s:6:"Operon";i:15;s:6:"132471";i:16;s:33:"SAR11_0812(yadG);SAR11_0813(yadH)";i:17;s:0:"";i:18;s:15:"View Structure
";}}