About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
1019813-1019911
(+)
TPP
1020025-1021903 (+)
XC_0846
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
XC_0846
Single gene
DOOR ID:
1666178
XC_0846
View Structure
2
1316898-1317121
(+)
cobalamin
1317232-1319113 (+)
XC_1091
Outer membrane receptor for transport of vitamin B
XC_1091
Single gene
DOOR ID:
1666284
XC_1091
View Structure
3
1531039-1531159
(+)
SAM
1531230-1532262 (+)
XC_1251
Homoserine O-succinyltransferase (HST) (6) (Homoserine transsuccinylase) (HTS)
XC_1251
Operon
DOOR ID:
129225
XC_1251,
XC_1252,
XC_1253
View Structure
4
2656872-2656947
(+)
fluoride
2657032-2658355 (+)
XC_2208
XC_2208
Single gene
DOOR ID:
1666693
XC_2208
View Structure
5
3745296-3745410
(+)
glycine
3745509-3748437 (+)
XC_3135
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
XC_3135
Single gene
DOOR ID:
1667026
XC_3135
View Structure
6
4140258-4140372
(+)
SAH
4140402-4141845 (+)
XC_3482
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
XC_3482
Single gene
DOOR ID:
1667136
XC_3482
View Structure
7
4203286-4203454
(-)
FMN
4202514-4203117 (-)
XC_3539
Riboflavin synthase alpha chain
XC_3539
Operon
DOOR ID:
129683
XC_3535,
XC_3536
(nusB)
,
XC_3537
(ribH)
,
XC_3538,
XC_3539
View Structure
8
4910570-4910741
(+)
yybP-ykoY
4910745-4911327 (+)
XC_4166
Putative manganese efflux pump MntP
XC_4166
Single gene
DOOR ID:
1667428
XC_4166
View Structure
Genome:
Xanthomonas campestris pv. campestris str. 8004
(
NC_007086.1
);
Phylum:
Gammaproteobacteria
a:9:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_007086.1";i:2;s:48:"Xanthomonas campestris pv. campestris str. 8004 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1019813-1019911";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1020025-1021903";i:10;s:1:"+";i:11;s:7:"XC_0846";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:7:"XC_0846";i:14;s:11:"Single gene";i:15;s:7:"1666178";i:16;s:7:"XC_0846";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_007086.1";i:2;s:48:"Xanthomonas campestris pv. campestris str. 8004 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1316898-1317121";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1317232-1319113";i:10;s:1:"+";i:11;s:7:"XC_1091";i:12;s:50:"Outer membrane receptor for transport of vitamin B";i:13;s:7:"XC_1091";i:14;s:11:"Single gene";i:15;s:7:"1666284";i:16;s:7:"XC_1091";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_007086.1";i:2;s:48:"Xanthomonas campestris pv. campestris str. 8004 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1531039-1531159";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1531230-1532262";i:10;s:1:"+";i:11;s:7:"XC_1251";i:12;s:78:"Homoserine O-succinyltransferase (HST) (6) (Homoserine transsuccinylase) (HTS)";i:13;s:7:"XC_1251";i:14;s:6:"Operon";i:15;s:6:"129225";i:16;s:23:"XC_1251;XC_1252;XC_1253";i:17;s:44:"methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_007086.1";i:2;s:48:"Xanthomonas campestris pv. campestris str. 8004 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2656872-2656947";i:6;s:1:"+";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"2657032-2658355";i:10;s:1:"+";i:11;s:7:"XC_2208";i:12;s:0:"";i:13;s:7:"XC_2208";i:14;s:11:"Single gene";i:15;s:7:"1666693";i:16;s:7:"XC_2208";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_007086.1";i:2;s:48:"Xanthomonas campestris pv. campestris str. 8004 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3745296-3745410";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"3745509-3748437";i:10;s:1:"+";i:11;s:7:"XC_3135";i:12;s:151:"Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))";i:13;s:7:"XC_3135";i:14;s:11:"Single gene";i:15;s:7:"1667026";i:16;s:7:"XC_3135";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_007086.1";i:2;s:48:"Xanthomonas campestris pv. campestris str. 8004 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4140258-4140372";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"4140402-4141845";i:10;s:1:"+";i:11;s:7:"XC_3482";i:12;s:73:"Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)";i:13;s:7:"XC_3482";i:14;s:11:"Single gene";i:15;s:7:"1667136";i:16;s:7:"XC_3482";i:17;s:96:"one-carbon metabolic process [GO:0006730]; S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_007086.1";i:2;s:48:"Xanthomonas campestris pv. campestris str. 8004 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4203286-4203454";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"4202514-4203117";i:10;s:1:"-";i:11;s:7:"XC_3539";i:12;s:31:"Riboflavin synthase alpha chain";i:13;s:7:"XC_3539";i:14;s:6:"Operon";i:15;s:6:"129683";i:16;s:51:"XC_3535;XC_3536(nusB);XC_3537(ribH);XC_3538;XC_3539";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_007086.1";i:2;s:48:"Xanthomonas campestris pv. campestris str. 8004 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4910570-4910741";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"4910745-4911327";i:10;s:1:"+";i:11;s:7:"XC_4166";i:12;s:35:"Putative manganese efflux pump MntP";i:13;s:7:"XC_4166";i:14;s:11:"Single gene";i:15;s:7:"1667428";i:16;s:7:"XC_4166";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}}