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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
66279-66442
(-)
FMN
65504-66197 (-)
cg0083
cg0083
Single gene
DOOR ID:
1662458
cg0083
View Structure
2
554203-554366
(-)
AdoCbl
552943-554128 (-)
cg0625
cg0625
Operon
DOOR ID:
127504
cg0621,
cg0622,
cg0623,
cg0624,
cg0625
View Structure
3
742547-742654
(-)
TPP
741697-742489 (-)
fabG
cg0825
Operon
DOOR ID:
127542
cg0824
(tnp5a (ISCg5a)
),
cg0825
(fabG)
View Structure
4
869859-870027
(-)
ydaO-yuaA
869270-869852 (-)
cg0936
Resuscitation-promoting factor Rpf1
cg0936
Single gene
DOOR ID:
1662732
cg0936
View Structure
5
1127774-1127883
(+)
TPP
1128480-1129821 (+)
cg1228
Tyrosine-protein phosphatase (8)
cg1228
Operon
DOOR ID:
127620
cg1227,
cg1228,
cg1229,
cg1230,
cg1231
(chaA)
,
cg1232
View Structure
6
1373101-1373213
(-)
TPP
1371017-1371344 (+)
cg1475
60S ribosomal protein L13a
cg1475
Operon
DOOR ID:
127669
cg1474,
cg1475
View Structure
7
1374007-1374123
(+)
SAM-IV
1374139-1374601 (+)
cg1478
Chorion protein S36
cg1478
Single gene
DOOR ID:
1662919
cg1478
View Structure
8
1544383-1544490
(-)
TPP
1541283-1543575 (-)
thiD1
Thiamine biosynthesis multifunctional protein ThiED [Includes: Thiamine-phosphate synthase (TMP-PPase) (TP synthase) (TPS) (Hydroxymethylpyrimidine kinase) (HMP kinase) (Hydroxymethylpyrimidine phosphate kinase) (HMP-P kinase) (HMP-phosphate kinase) (HMPP kinase)]
cg1654
Operon
DOOR ID:
127704
cg1654
(thiD1)
,
cg1655
(thiM)
View Structure
9
2120271-2120384
(+)
TPP
2120384-2121050 (+)
thiE
cg2236
Operon
DOOR ID:
127816
cg2236
(thiE)
,
cg2237
(thiO)
,
cg2238
(thiS)
,
cg2239
(thiG)
,
cg2240
(thiF)
View Structure
10
2292279-2292467
(-)
ydaO-yuaA
2291636-2292266 (-)
cg2402
Probable endopeptidase Cgl2188
cg2402
Single gene
DOOR ID:
1663259
cg2402
View Structure
Genome:
Corynebacterium glutamicum ATCC 13032 IS fingerprint type 4-5
(
NC_006958.1
);
Phylum:
Actinobacteria
a:11:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_006958.1";i:2;s:61:"Corynebacterium glutamicum ATCC 13032 IS fingerprint type 4-5";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:11:"66279-66442";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:11:"65504-66197";i:10;s:1:"-";i:11;s:6:"cg0083";i:12;s:0:"";i:13;s:6:"cg0083";i:14;s:11:"Single gene";i:15;s:7:"1662458";i:16;s:6:"cg0083";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_006958.1";i:2;s:61:"Corynebacterium glutamicum ATCC 13032 IS fingerprint type 4-5";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"554203-554366";i:6;s:1:"-";i:7;s:6:"AdoCbl";i:8;s:0:"";i:9;s:13:"552943-554128";i:10;s:1:"-";i:11;s:6:"cg0625";i:12;s:0:"";i:13;s:6:"cg0625";i:14;s:6:"Operon";i:15;s:6:"127504";i:16;s:34:"cg0621;cg0622;cg0623;cg0624;cg0625";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_006958.1";i:2;s:61:"Corynebacterium glutamicum ATCC 13032 IS fingerprint type 4-5";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"742547-742654";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"741697-742489";i:10;s:1:"-";i:11;s:4:"fabG";i:12;s:0:"";i:13;s:6:"cg0825";i:14;s:6:"Operon";i:15;s:6:"127542";i:16;s:34:"cg0824(tnp5a(ISCg5a));cg0825(fabG)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_006958.1";i:2;s:61:"Corynebacterium glutamicum ATCC 13032 IS fingerprint type 4-5";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"869859-870027";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:13:"869270-869852";i:10;s:1:"-";i:11;s:6:"cg0936";i:12;s:36:"Resuscitation-promoting factor Rpf1 ";i:13;s:6:"cg0936";i:14;s:11:"Single gene";i:15;s:7:"1662732";i:16;s:6:"cg0936";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_006958.1";i:2;s:61:"Corynebacterium glutamicum ATCC 13032 IS fingerprint type 4-5";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1127774-1127883";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1128480-1129821";i:10;s:1:"+";i:11;s:6:"cg1228";i:12;s:32:"Tyrosine-protein phosphatase (8)";i:13;s:6:"cg1228";i:14;s:6:"Operon";i:15;s:6:"127620";i:16;s:47:"cg1227;cg1228;cg1229;cg1230;cg1231(chaA);cg1232";i:17;s:348:"axon extension involved in axon guidance [GO:0048846]; central complex development [GO:0048036]; mushroom body development [GO:0016319]; negative regulation of epidermal growth factor receptor signaling pathway [GO:0042059]; peptidyl-tyrosine phosphorylation [GO:0018108]; protein dephosphorylation [GO:0006470]; thermosensory behavior [GO:0040040]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_006958.1";i:2;s:61:"Corynebacterium glutamicum ATCC 13032 IS fingerprint type 4-5";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1373101-1373213";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1371017-1371344";i:10;s:1:"+";i:11;s:6:"cg1475";i:12;s:26:"60S ribosomal protein L13a";i:13;s:6:"cg1475";i:14;s:6:"Operon";i:15;s:6:"127669";i:16;s:13:"cg1474;cg1475";i:17;s:109:"chaeta morphogenesis [GO:0008407]; cytoplasmic translation [GO:0002181]; Notch signaling pathway [GO:0007219]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_006958.1";i:2;s:61:"Corynebacterium glutamicum ATCC 13032 IS fingerprint type 4-5";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1374007-1374123";i:6;s:1:"+";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"1374139-1374601";i:10;s:1:"+";i:11;s:6:"cg1478";i:12;s:19:"Chorion protein S36";i:13;s:6:"cg1478";i:14;s:11:"Single gene";i:15;s:7:"1662919";i:16;s:6:"cg1478";i:17;s:131:"eggshell chorion assembly [GO:0007306]; vitelline membrane formation involved in chorion-containing eggshell formation [GO:0007305]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_006958.1";i:2;s:61:"Corynebacterium glutamicum ATCC 13032 IS fingerprint type 4-5";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1544383-1544490";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1541283-1543575";i:10;s:1:"-";i:11;s:5:"thiD1";i:12;s:265:"Thiamine biosynthesis multifunctional protein ThiED [Includes: Thiamine-phosphate synthase (TMP-PPase) (TP synthase) (TPS) (Hydroxymethylpyrimidine kinase) (HMP kinase) (Hydroxymethylpyrimidine phosphate kinase) (HMP-P kinase) (HMP-phosphate kinase) (HMPP kinase)]";i:13;s:6:"cg1654";i:14;s:6:"Operon";i:15;s:6:"127704";i:16;s:26:"cg1654(thiD1);cg1655(thiM)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_006958.1";i:2;s:61:"Corynebacterium glutamicum ATCC 13032 IS fingerprint type 4-5";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2120271-2120384";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2120384-2121050";i:10;s:1:"+";i:11;s:4:"thiE";i:12;s:0:"";i:13;s:6:"cg2236";i:14;s:6:"Operon";i:15;s:6:"127816";i:16;s:64:"cg2236(thiE);cg2237(thiO);cg2238(thiS);cg2239(thiG);cg2240(thiF)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_006958.1";i:2;s:61:"Corynebacterium glutamicum ATCC 13032 IS fingerprint type 4-5";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2292279-2292467";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"2291636-2292266";i:10;s:1:"-";i:11;s:6:"cg2402";i:12;s:31:"Probable endopeptidase Cgl2188 ";i:13;s:6:"cg2402";i:14;s:11:"Single gene";i:15;s:7:"1663259";i:16;s:6:"cg2402";i:17;s:0:"";i:18;s:15:"View Structure ";}}
