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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
120715-120814
(-)
TPP
119699-120683 (-)
tbpA
SC0102
Operon
DOOR ID:
125809
SC0100
(thiQ)
,
SC0101
(thiP)
,
SC0102
(tbpA)
View Structure
2
899104-899248
(+)
MOCO
900246-900759 (+)
moaB
SC0801
Operon
DOOR ID:
125951
SC0800
(moaA)
,
SC0801
(moaB)
,
SC0802
(moaC)
,
SC0803
(moaD)
,
SC0804
(moaE)
,
SC0805
(ybhL)
View Structure
3
1947108-1947209
(+)
yybP-ykoY
1947266-1947887 (+)
yebN
SC1828
Single gene
DOOR ID:
1659886
SC1828
(yebN)
View Structure
4
2135637-2135812
(-)
cobalamin
2134160-2135540 (-)
cbiA
SC2043
Operon
DOOR ID:
126167
SC2029
(cboQ)
,
SC2030
(cbiN)
,
SC2031
(cbiM)
,
SC2032
(cbiL)
,
SC2033
(cbiK)
,
SC2034
(cbiJ)
,
SC2035
(cbiH)
,
SC2036
(cbiG)
,
SC2037
(cbiF)
,
SC2038
(cbiT)
,
SC2039
(cbiE)
,
SC2040
(cbiD)
,
SC2041
(cbiC)
,
SC2042
(cbiB)
,
SC2043
(cbiA)
View Structure
5
2264395-2264491
(-)
TPP
2263565-2264363 (-)
thiM
SC2162
Operon
DOOR ID:
126182
SC2160
(yegW)
,
SC2161
(thiD)
,
SC2162
(thiM)
View Structure
6
3320688-3320886
(-)
FMN
3319928-3320582 (-)
ribB
SC3141
Single gene
DOOR ID:
1660367
SC3141
(ribB)
View Structure
7
4282220-4282413
(+)
cobalamin
4282478-4284323 (+)
btuB
SC4019
Operon
DOOR ID:
126564
SC4019
(btuB)
,
SC4020
(murI)
View Structure
8
4316047-4316210
(-)
TPP
4314065-4315961 (-)
thiC
SC4045
Operon
DOOR ID:
126571
SC4043
(thiF)
,
SC4044
(thiE)
,
SC4045
(thiC)
View Structure
9
4516134-4516178
(+)
mini-ykkC
4516199-4516517 (+)
sugE
SC4217
Single gene
DOOR ID:
1660764
SC4217
(sugE)
View Structure
10
4613983-4614095
(+)
Mg sensor
4614191-4616900 (+)
mgtA
SC4312
Single gene
DOOR ID:
1660800
SC4312
(mgtA)
View Structure
Genome:
Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67
(
NC_006905.1
);
Phylum:
Gammaproteobacteria
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SC-B67 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"120715-120814";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"119699-120683";i:10;s:1:"-";i:11;s:4:"tbpA";i:12;s:0:"";i:13;s:6:"SC0102";i:14;s:6:"Operon";i:15;s:6:"125809";i:16;s:38:"SC0100(thiQ);SC0101(thiP);SC0102(tbpA)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_006905.1";i:2;s:69:"Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"899104-899248";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:13:"900246-900759";i:10;s:1:"+";i:11;s:4:"moaB";i:12;s:0:"";i:13;s:6:"SC0801";i:14;s:6:"Operon";i:15;s:6:"125951";i:16;s:77:"SC0800(moaA);SC0801(moaB);SC0802(moaC);SC0803(moaD);SC0804(moaE);SC0805(ybhL)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_006905.1";i:2;s:69:"Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1947108-1947209";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1947266-1947887";i:10;s:1:"+";i:11;s:4:"yebN";i:12;s:0:"";i:13;s:6:"SC1828";i:14;s:11:"Single gene";i:15;s:7:"1659886";i:16;s:12:"SC1828(yebN)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_006905.1";i:2;s:69:"Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2135637-2135812";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2134160-2135540";i:10;s:1:"-";i:11;s:4:"cbiA";i:12;s:0:"";i:13;s:6:"SC2043";i:14;s:6:"Operon";i:15;s:6:"126167";i:16;s:194:"SC2029(cboQ);SC2030(cbiN);SC2031(cbiM);SC2032(cbiL);SC2033(cbiK);SC2034(cbiJ);SC2035(cbiH);SC2036(cbiG);SC2037(cbiF);SC2038(cbiT);SC2039(cbiE);SC2040(cbiD);SC2041(cbiC);SC2042(cbiB);SC2043(cbiA)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_006905.1";i:2;s:69:"Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2264395-2264491";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2263565-2264363";i:10;s:1:"-";i:11;s:4:"thiM";i:12;s:0:"";i:13;s:6:"SC2162";i:14;s:6:"Operon";i:15;s:6:"126182";i:16;s:38:"SC2160(yegW);SC2161(thiD);SC2162(thiM)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_006905.1";i:2;s:69:"Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3320688-3320886";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"3319928-3320582";i:10;s:1:"-";i:11;s:4:"ribB";i:12;s:0:"";i:13;s:6:"SC3141";i:14;s:11:"Single gene";i:15;s:7:"1660367";i:16;s:12:"SC3141(ribB)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_006905.1";i:2;s:69:"Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4282220-4282413";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4282478-4284323";i:10;s:1:"+";i:11;s:4:"btuB";i:12;s:0:"";i:13;s:6:"SC4019";i:14;s:6:"Operon";i:15;s:6:"126564";i:16;s:25:"SC4019(btuB);SC4020(murI)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_006905.1";i:2;s:69:"Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4316047-4316210";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4314065-4315961";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:0:"";i:13;s:6:"SC4045";i:14;s:6:"Operon";i:15;s:6:"126571";i:16;s:38:"SC4043(thiF);SC4044(thiE);SC4045(thiC)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_006905.1";i:2;s:69:"Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4516134-4516178";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"4516199-4516517";i:10;s:1:"+";i:11;s:4:"sugE";i:12;s:0:"";i:13;s:6:"SC4217";i:14;s:11:"Single gene";i:15;s:7:"1660764";i:16;s:12:"SC4217(sugE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_006905.1";i:2;s:69:"Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4613983-4614095";i:6;s:1:"+";i:7;s:9:"Mg sensor";i:8;s:0:"";i:9;s:15:"4614191-4616900";i:10;s:1:"+";i:11;s:4:"mgtA";i:12;s:0:"";i:13;s:6:"SC4312";i:14;s:11:"Single gene";i:15;s:7:"1660800";i:16;s:12:"SC4312(mgtA)";i:17;s:0:"";i:18;s:15:"View Structure ";}}