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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
35443-35510
(+)
fluoride
35636-37016 (+)
VF_0031
Chloride channel protein
VF_0031
Single gene
DOOR ID:
1657347
VF_0031
View Structure
2
37315-37427
(+)
TPP
37616-39551 (+)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
VF_0032
Operon
DOOR ID:
125069
VF_0032
(thiC)
,
VF_0033
(thiE)
,
VF_0034
(thiF)
,
VF_2576
(thiS)
,
VF_0035
(thiG)
,
VF_0036
(thiH)
View Structure
3
270205-270317
(+)
TPP
270370-271387 (+)
tbpA
Thiamine/thiamine pyrophosphate ABC transporter; thiamine/thiamine pyrophospate-binding protein ThiB/TbpA/SfuA
VF_0267
Operon
DOOR ID:
125103
VF_0267
(tbpA)
,
VF_0268
(thiP)
,
VF_0269
(thiQ)
View Structure
4
1607848-1607953
(+)
glycine
1608050-1609433 (+)
VF_1454
Sodium-linked D-alanine glycine permease
VF_1454
Single gene
DOOR ID:
1657907
VF_1454
View Structure
5
2736076-2736294
(-)
cobalamin
2734182-2736030 (-)
btuB
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
VF_2435
Operon
DOOR ID:
125494
VF_2434,
VF_2435
(btuB)
View Structure
Genome:
Vibrio fischeri ES114 chromosome I
(
NC_006840.2
);
Phylum:
Gammaproteobacteria
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