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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
349806-349969
(-)
yybP-ykoY
345568-349018 (+)
XOO0336
Na+/proline symporter
XOO0336
Single gene
DOOR ID:
1655496
XOO0336
View Structure
2
976621-976718
(+)
TPP
976966-978688 (+)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
XOO0947
Single gene
DOOR ID:
1656068
XOO0947
(thiC)
View Structure
3
1368227-1368452
(+)
cobalamin
1368568-1370446 (+)
btuB
Outer membrane receptor for transport of vitamin B
XOO1345
Single gene
DOOR ID:
1656197
XOO1345
(btuB)
View Structure
4
1911398-1911517
(+)
SAM
1912615-1913833 (+)
metB
Cystathionine gamma-synthase
XOO1818
Operon
DOOR ID:
124544
XOO1817
(metA)
,
XOO1818
(metB)
View Structure
5
2682944-2683020
(+)
fluoride
2683106-2684438 (+)
XOO2539
Chloride channel protein EriC
XOO2539
Single gene
DOOR ID:
1656557
XOO2539
View Structure
6
3817140-3817254
(+)
glycine
3817278-3820308 (+)
gcvP
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
XOO3547
Single gene
DOOR ID:
1656856
XOO3547
(gcvP)
View Structure
7
4051725-4051840
(+)
SAH
4051872-4053315 (+)
sahH
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
XOO3798
Single gene
DOOR ID:
1655652
XOO3798
(sahH)
View Structure
8
4115168-4115343
(-)
FMN
4114397-4115000 (-)
ribE
Riboflavin synthase alpha chain
XOO3854
Operon
DOOR ID:
124925
XOO3853
(ribA)
,
XOO3854
(ribE)
View Structure
Genome:
Xanthomonas oryzae pv. oryzae KACC 10331
(
NC_006834.1
);
Phylum:
Gammaproteobacteria
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