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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
110004-110177
(-)
lysine
108279-109908 (-)
LBA0112
Putative glutamine ABC transporter
LBA0112
Operon
DOOR ID:
123307
LBA0111,
LBA0112
View Structure
2
206473-206636
(+)
ykoK
206707-209382 (+)
LBA0212
Cation transporter P-ATPase
LBA0212
Operon
DOOR ID:
123328
LBA0212,
LBA0213,
LBA0214,
LBA0215,
LBA0216
(ksgA)
View Structure
3
237626-237723
(-)
purine
236971-237562 (-)
LBA0240
Xanthine phosphoribosyltransferase (XPRTase) (2)
LBA0240
Operon
DOOR ID:
123337
LBA0239,
LBA0240
View Structure
4
563417-563507
(+)
TPP
563545-564136 (+)
LBA0576
LBA0576
Single gene
DOOR ID:
1653314
LBA0576
View Structure
5
834692-834862
(+)
lysine
834939-836260 (+)
lysA
Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (0)
LBA0851
Operon
DOOR ID:
123461
LBA0851
(lysA)
,
LBA0852
(dapD)
,
LBA0853,
LBA0854,
LBA0855
(dapB)
,
LBA0856,
LBA0857
View Structure
6
939721-939833
(+)
FMN
939897-940603 (+)
LBA0965
Riboflavin transporter
LBA0965
Single gene
DOOR ID:
1653428
LBA0965
View Structure
7
965933-965991
(+)
fluoride
966019-966423 (+)
crcB
Putative fluoride ion transporter CrcB 1
LBA0992
Operon
DOOR ID:
123486
LBA0992
(crcB)
,
LBA0993
(crcB)
View Structure
8
1626447-1626537
(-)
SMK_box
1623769-1625241 (-)
LBA1621
Multidrug transporter
LBA1621
Operon
DOOR ID:
123605
LBA1621,
LBA1622
(metK)
View Structure
Genome:
Lactobacillus acidophilus NCFM
(
NC_006814.3
);
Phylum:
Firmicutes
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