Genome: Bacillus clausii KSM-K16 (NC_006582.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 270893-271047 (+)glmS271117-272920 (+)glmS

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)		ABC0245Single gene

DOOR ID: 1649664		ABC0245 (glmS) View Structure
2 603968-604071 (-)SAM602782-603823 (-)ABC0552

Methionine import ATP-binding protein MetN 1 		ABC0552Operon

DOOR ID: 121484		ABC0549,
ABC0550,
ABC0551,
ABC0552		 View Structure
3 730609-730717 (+)TPP730782-732060 (+)ABC0668

Acetylornithine deacetylase (6)		ABC0668Operon

DOOR ID: 121504		ABC0668,
ABC0669 (tenA)		 View Structure
4 810751-810916 (-)ykoK809171-810539 (-)ABC0737

Magnesium transporter MgtE		ABC0737Single gene

DOOR ID: 1649837		ABC0737 View Structure
5 829676-829775 (-)TPP828927-829602 (-)ABC0756

Aminopyrimidine aminohydrolase 		ABC0756Operon

DOOR ID: 121523		ABC0755,
ABC0756		 View Structure
6 831922-832097 (-)yybP-ykoY831062-831872 (-)ABC0758

Toxic anion resistance protein		ABC0758Single gene

DOOR ID: 1649848		ABC0758 View Structure
7 951406-951512 (+)SAM951588-952614 (+)metN

Methionine import ATP-binding protein MetN 2 		ABC0876Operon

DOOR ID: 121545		ABC0876 (metN),
ABC0877,
ABC0878,
ABC0879		 View Structure
8 1039390-1039491 (+)purine1039566-1040868 (+)pbuG

Xanthine/uracil permease		ABC0959Single gene

DOOR ID: 1649922		ABC0959 (pbuG) View Structure
9 1115665-1115766 (+)purine1115879-1116371 (+)purE

N5-carboxyaminoimidazole ribonucleotide mutase (N5-CAIR mutase) (8) (5-(carboxyamino)imidazole ribonucleotide mutase)		ABC1024Operon

DOOR ID: 121578		ABC1024 (purE),
ABC1025 (purK),
ABC1026 (purB),
ABC1027 (purC),
ABC1028 (purS),
ABC1029 (purQ),
ABC1030 (purL),
ABC1031 (purF),
ABC1032 (purM),
ABC1033 (purN),
ABC1034 (purH),
ABC1035 (purD)		 View Structure
10 1554717-1554818 (+)purine1554891-1555497 (+)xpt

Xanthine phosphoribosyltransferase (XPRTase) (2)		ABC1443Operon

DOOR ID: 121657		ABC1443 (xpt),
ABC1444		 View Structure
11 1563582-1563686 (+)SAM1564042-1566328 (+)metC

5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)		ABC1449Single gene

DOOR ID: 1650123		ABC1449 (metC) View Structure
12 1563740-1563880 (+)cobalamin1564042-1566328 (+)metC

5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)		ABC1449Single gene

DOOR ID: 1650123		ABC1449 (metC) View Structure
13 1701649-1701759 (+)SAM1701818-1703018 (+)ABC1578

Homoserine dehydrogenase (HDH) 		ABC1578Single gene

DOOR ID: 1650174		ABC1578 View Structure
14 1705377-1705479 (-)SAM1704137-1705244 (-)ABC1580

Cobalamin-independent methionine synthase II		ABC1580Single gene

DOOR ID: 1650176		ABC1580 View Structure
15 1760089-1760187 (-)TPP1759175-1760003 (-)ABC1627

Phosphomethylpyrimidine kinase 		ABC1627Single gene

DOOR ID: 1650195		ABC1627 View Structure
16 1860935-1861046 (+)TPP1861117-1861747 (+)thiC

Thiamine-phosphate synthase (TP synthase) (TPS) (Thiamine-phosphate pyrophosphorylase) (TMP pyrophosphorylase) (TMP-PPase)		ABC1733Operon

DOOR ID: 121714		ABC1733 (thiC),
ABC1734 (thiS),
ABC1735 (thiG),
ABC1736 (goxB),
ABC1737,
ABC1738,
ABC1739		 View Structure
17 1930361-1930511 (+)FMN1930643-1931288 (+)ribB

Riboflavin synthase alpha subunit RibB 		ABC1811Operon

DOOR ID: 121730		ABC1811 (ribB),
ABC1812 (ribA),
ABC1813 (ribH)		 View Structure
18 1983212-1983311 (+)SAM1983394-1984501 (+)metI

Cystathionine gamma-synthase (8)		ABC1867Operon

DOOR ID: 121742		ABC1867 (metI),
ABC1868,
ABC1869		 View Structure
19 2048185-2048284 (+)TPP2048385-2048991 (+)ABC1933

ABC1933Operon

DOOR ID: 121754		ABC1933,
ABC1934,
ABC1935		 View Structure
20 2146030-2146207 (+)lysine2146300-2147206 (+)ABC2030

4-hydroxy-tetrahydrodipicolinate synthase (HTPA synthase) 		ABC2030Single gene

DOOR ID: 1650348		ABC2030 View Structure
21 2249527-2249570 (-)PreQ12248817-2249483 (-)ABC2129

7-cyano-7-deazaguanine synthase (0) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein QueC)		ABC2129Operon

DOOR ID: 121794		ABC2126,
ABC2127,
ABC2128,
ABC2129		 View Structure
22 2619862-2619955 (-)glycine2618578-2619682 (-)gcvT

Aminomethyltransferase (0) (Glycine cleavage system T protein)		ABC2495Operon

DOOR ID: 121864		ABC2493 (gcvPB),
ABC2494 (gcvPA),
ABC2495 (gcvT)		 View Structure
23 3008342-3008449 (-)SAM3006948-3008166 (-)metK

S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)		ABC2878Single gene

DOOR ID: 1650678		ABC2878 (metK) View Structure
24 3075570-3075743 (-)lysine3073842-3075480 (-)ABC2952

Na+:H+ antiporter		ABC2952Single gene

DOOR ID: 1650717		ABC2952 View Structure
25 3104588-3104693 (-)SAM3103495-3104524 (-)ABC2985

Methionine import ATP-binding protein MetN 3 		ABC2985Operon

DOOR ID: 121962		ABC2983,
ABC2984,
ABC2985		 View Structure
26 3181483-3181616 (+)FMN3181733-3182702 (+)ABC3060

Drug/metabolite transporter (DMT) superfamily protein		ABC3060Single gene

DOOR ID: 1650755		ABC3060 View Structure
27 3516431-3516508 (-)ZMP-ZTP3515540-3516380 (-)folD

Bifunctional protein FolD [Includes: Methylenetetrahydrofolate dehydrogenase ]		ABC3388Single gene

DOOR ID: 1650891		ABC3388 (folD) View Structure
28 4004578-4004674 (-)ykkC-yxkD4004177-4004525 (-)ABC3844

Small multidrug resistance protein		ABC3844Operon

DOOR ID: 122119		ABC3843,
ABC3844		 View Structure
29 4204388-4204479 (-)ykkC-yxkD4203079-4204336 (-)codB

Nucleobase:cation symporter		ABC4033Operon

DOOR ID: 122153		ABC4032,
ABC4033 (codB)		 View Structure