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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
206653-206797
(+)
cobalamin
206817-207513 (+)
syc0183_d
Hydrogenase accessory protein
syc0183_d
Single gene
DOOR ID:
1648624
syc0183_d
View Structure
2
206684-206826
(+)
AdoCbl
207667-211240 (-)
metH
Methionine synthase (3) (5-methyltetrahydrofolate--homocysteine methyltransferase)
syc0184_c
Single gene
DOOR ID:
1648625
syc0184_c
(metH)
View Structure
3
505864-505961
(+)
TPP
506078-507449 (+)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
syc0453_d
Single gene
DOOR ID:
1648746
syc0453_d
(thiC)
View Structure
4
1705656-1705712
(+)
glutamine
1706402-1707044 (-)
syc1581_c
syc1581_c
Operon
DOOR ID:
121127
syc1581_c,
syc1582_c,
syc1583_c
(clpX)
,
syc1584_c
(clpP)
,
syc1585_c
(tig)
View Structure
5
2053041-2053114
(-)
fluoride
2051319-2052957 (-)
syc1910_c
Probable Na+/H+-exchanging protein
syc1910_c
Single gene
DOOR ID:
1649352
syc1910_c
View Structure
6
2397735-2397923
(-)
cobalamin
2396222-2397686 (-)
syc2243_c
Ferredoxin-nitrite reductase-like protein
syc2243_c
Operon
DOOR ID:
121286
syc2238_c
(cumB)
,
syc2239_c
(cobB)
,
syc2240_c
(cobJ)
,
syc2241_c
(cobI)
,
syc2242_c
(cobH)
,
syc2243_c
View Structure
Genome:
Synechococcus elongatus PCC 6301
(
NC_006576.1
);
Phylum:
Cyanobacteria/Melainabacteria group
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