About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
155230-155339
(+)
TPP
155410-157225 (+)
ZMO0172
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
ZMO0172
Single gene
DOOR ID:
1647291
ZMO0172
View Structure
2
542071-542148
(-)
fluoride
540547-542038 (-)
ZMO0547
Chloride channel core (Voltage-gated chloride channel protein)
ZMO0547
Single gene
DOOR ID:
1647077
ZMO0547
View Structure
3
994310-994488
(+)
cobalamin
994604-996716 (+)
ZMO0979
TonB-dependent receptor
ZMO0979
Single gene
DOOR ID:
1647497
ZMO0979
View Structure
4
1014916-1015117
(+)
cobalamin
1015181-1017461 (+)
ZMO1000
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)
ZMO1000
Single gene
DOOR ID:
1647504
ZMO1000
View Structure
Genome:
Zymomonas mobilis subsp. mobilis ZM4
(
NC_006526.2
);
Phylum:
Alphaproteobacteria
a:5:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_006526.2";i:2;s:37:"Zymomonas mobilis subsp. mobilis ZM4 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"155230-155339";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"155410-157225";i:10;s:1:"+";i:11;s:7:"ZMO0172";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:7:"ZMO0172";i:14;s:11:"Single gene";i:15;s:7:"1647291";i:16;s:7:"ZMO0172";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_006526.2";i:2;s:37:"Zymomonas mobilis subsp. mobilis ZM4 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"542071-542148";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:13:"540547-542038";i:10;s:1:"-";i:11;s:7:"ZMO0547";i:12;s:62:"Chloride channel core (Voltage-gated chloride channel protein)";i:13;s:7:"ZMO0547";i:14;s:11:"Single gene";i:15;s:7:"1647077";i:16;s:7:"ZMO0547";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_006526.2";i:2;s:37:"Zymomonas mobilis subsp. mobilis ZM4 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"994310-994488";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"994604-996716";i:10;s:1:"+";i:11;s:7:"ZMO0979";i:12;s:23:"TonB-dependent receptor";i:13;s:7:"ZMO0979";i:14;s:11:"Single gene";i:15;s:7:"1647497";i:16;s:7:"ZMO0979";i:17;s:34:"siderophore transport [GO:0015891]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_006526.2";i:2;s:37:"Zymomonas mobilis subsp. mobilis ZM4 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1014916-1015117";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1015181-1017461";i:10;s:1:"+";i:11;s:7:"ZMO1000";i:12;s:172:"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)";i:13;s:7:"ZMO1000";i:14;s:11:"Single gene";i:15;s:7:"1647504";i:16;s:7:"ZMO1000";i:17;s:44:"methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure ";}}