Genome: Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 (NC_006511.1); Phylum: Gammaproteobacteria
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 128206-128305 (-)TPP127190-128174 (-)tbpA

Thiamine-binding periplasmic protein

DOOR ID: 117801
SPA0108 (thiQ),
SPA0109 (thiP),
SPA0110 (tbpA)
View Structure
2 789113-789209 (+)TPP789240-790038 (+)thiM

Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)

DOOR ID: 117922
SPA0705 (thiM),
SPA0706 (thiD),
SPA0707 (yegW)
View Structure
3 931753-931928 (+)cobalamin933400-934360 (+)cbiB

Cobalamin biosynthesis protein CbiB

DOOR ID: 117938
SPA0837 (cbiB),
SPA0838 (cbiC),
SPA0839 (cbiD),
SPA0840 (cbiE),
SPA0841 (cbiT),
SPA0842 (cbiF),
SPA0843 (cbiG),
SPA0844 (cbiH),
SPA0845 (cbiJ),
SPA0846 (cbiK),
SPA0847 (cbiL),
SPA0848 (cbiM),
SPA0849 (cbiN),
SPA0850 (cbiQ),
SPA0851 (cbiO),
SPA0852 (cbiP),
SPA0853 (cobU),
SPA0854 (cobS),
SPA0855 (cobT)
View Structure
4 1110100-1110201 (-)yybP-ykoY1109421-1110042 (-)yebN

Probable manganese efflux pump MntP
SPA1039Single gene

DOOR ID: 1643681
SPA1039 (yebN) View Structure
5 2029450-2029594 (-)MOCO2027938-2028451 (-)moaB

Molybdenum cofactor biosynthesis protein B

DOOR ID: 118123
SPA1945 (ybhL),
SPA1946 (moaE),
SPA1947 (moaD),
SPA1948 (moaC),
SPA1949 (moaB),
SPA1950 (moaA)
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6 3169071-3169269 (-)FMN3168311-3168965 (-)ribB

3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
SPA3063Single gene

DOOR ID: 1644459
SPA3063 (ribB) View Structure
7 4121601-4121794 (+)cobalamin4121859-4123704 (+)btuB

Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)

DOOR ID: 118511
SPA3968 (btuB),
SPA3969 (murI)
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8 4154778-4154941 (-)TPP4152796-4154692 (-)thiC

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)

DOOR ID: 118517
SPA3996 (thiH),
SPA3997 (thiG),
SPA3998 (thiS),
SPA3999 (thiF),
SPA4000 (thiE),
SPA4001 (thiC)
View Structure
9 4331173-4331217 (+)mini-ykkC4331238-4331556 (+)sugE

SPA4155Single gene

DOOR ID: 1644839
SPA4155 (sugE) View Structure