RiboswitchDB

Genome: Photobacterium profundum SS9 chromosome II (NC_006371.1); Phylum: Gammaproteobacteria

S.No.

Riboswitch Location and Strand

Riboswitch class

Downstream gene location and Strand

Downstream gene name/gene product description

Locus_tag of downstream gene

Single gene/within operon (According to DOOR database)

Operon details (List of genes within operon and their Locus_tag)

Predicted Structure

1

355541-355625 (+)

c-di-GMP-I

355696-357163 (+)

PBPRB0312

GlcNAc-binding protein A

single gene

DOOR ID: 1636621

PBPRB0312

2

809708-809805 (-)

TPP

808798-809629 (-)

PBPRB0688

Putative phosphomethylpyrimidine kinase

Operon

DOOR ID: 114746

PBPRB0686,
PBPRB0687,
PBPRB0688

3

1039458-1039643 (-)

FMN

1038627-1039314 (-)

PBPRB0898

3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)

Single gene

DOOR ID: 1636960

PBPRB0898

4

1538797-1538896 (-)

purine

1537713-1538718 (-)

PBPRB1379

Adenine deaminase (ADE) (Adenine aminohydrolase) (AAH)

Single gene

DOOR ID: 1637249

PBPRB1379

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";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_006371.1";i:2;s:42:"Photobacterium profundum SS9 chromosome II";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1039458-1039643";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1038627-1039314";i:10;s:1:"-";i:11;s:9:"PBPRB0898";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:9:"PBPRB0898";i:14;s:11:"Single gene";i:15;s:7:"1636960";i:16;s:9:"PBPRB0898";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure
";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_006371.1";i:2;s:42:"Photobacterium profundum SS9 chromosome II";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1538797-1538896";i:6;s:1:"-";i:7;s:6:"purine";i:8;s:0:"";i:9;s:15:"1537713-1538718";i:10;s:1:"-";i:11;s:9:"PBPRB1379";i:12;s:55:"Adenine deaminase (ADE)  (Adenine aminohydrolase) (AAH)";i:13;s:9:"PBPRB1379";i:14;s:11:"Single gene";i:15;s:7:"1637249";i:16;s:9:"PBPRB1379";i:17;s:116:"adenine catabolic process [GO:0006146]; hypoxanthine salvage [GO:0043103]; nucleotide metabolic process [GO:0009117]";i:18;s:15:"View Structure
";}}