Genome: Photobacterium profundum SS9 chromosome I (NC_006370.1); Phylum: Gammaproteobacteria
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 58126-58228 (+)yybP-ykoY58321-58879 (+)PBPRA0058

Conserved hypothetical membrane protein
PBPRA0058Single gene

DOOR ID: 1634804
PBPRA0058 View Structure
2 106620-106717 (+)TPP106854-108777 (+)PBPRA0106

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)

DOOR ID: 114046
PBPRA0107 (thiE),
View Structure
3 420393-420522 (-)TPP419247-420234 (-)tbpA

Putative ABC-type thiamine transport system;periplasmic component

DOOR ID: 114106
PBPRA0412 (thiP),
PBPRA0413 (tbpA)
View Structure
4 1201127-1201310 (+)lysine1201504-1203004 (+)PBPRA1083

Putative Na+/H+ antiporter
PBPRA1083Single gene

DOOR ID: 1635218
PBPRA1083 View Structure
5 1247584-1247737 (+)MOCO1248864-1249362 (+)moaC

Cyclic pyranopterin monophosphate synthase (7) (Molybdenum cofactor biosynthesis protein C)

DOOR ID: 114243
PBPRA1125 (moaC),
PBPRA1126 (moaD),
View Structure
6 1717696-1717779 (-)fluoride1716785-1717478 (-)PBPRA1515


DOOR ID: 114314
View Structure
7 2427572-2427677 (+)c-di-GMP-I2427797-2428388 (+)PBPRA2110

Uncharacterized protein
PBPRA2110single gene

DOOR ID: 1635815
PBPRA2110 View Structure
8 2453318-2453475 (+)glycine2453693-2455085 (+)PBPRA2132

Putative sodium/alanine symporter
PBPRA2132Single gene

DOOR ID: 1635829
PBPRA2132 View Structure
9 2453496-2453611 (+)glycine2453693-2455085 (+)PBPRA2132

Putative sodium/alanine symporter
PBPRA2132Single gene

DOOR ID: 1635829
PBPRA2132 View Structure
10 2634481-2634568 (+)c-di-GMP-I2634668-2637323 (+)PBPRA2288

Hypothetical ToxR-regulated lipoprotein
PBPRA2288single gene

DOOR ID: 1635909
PBPRA2288 View Structure
11 3172735-3172907 (+)lysine3172989-3174573 (+)PBPRA2736

Putative Na+/H+ antiporter
PBPRA2736Single gene

DOOR ID: 1636145
PBPRA2736 View Structure
12 3733830-3734021 (+)lysine3734129-3735509 (+)PBPRA3293

PBPRA3293Single gene

DOOR ID: 1636338
PBPRA3293 View Structure
13 3919359-3919583 (-)cobalamin3917500-3919321 (-)PBPRA3464

Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
PBPRA3464Single gene

DOOR ID: 1636393
PBPRA3464 View Structure