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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
133448-133514
(+)
ykkC-III
133524-133839 (+)
nfa1440
nfa1440
operon
DOOR ID:
111999
nfa14380,
nfa14390,
nfa14400,
nfa14410
(fadE17)
,
nfa14420,
nfa14430,
nfa14440,
nfa14450,
nfa14460,
nfa14470,
nfa14480,
nfa14490
View Structure
2
396893-397006
(+)
SAM-IV
397032-398370 (+)
nfa3810
nfa3810
Single gene
DOOR ID:
1630006
nfa3810
View Structure
3
1024437-1024547
(-)
SAM-IV
1022931-1023246 (+)
nfa9210
nfa9210
Single gene
DOOR ID:
1630186
nfa9210
View Structure
4
1997081-1997143
(-)
cobalamin
1995994-1997026 (-)
nfa18240
nfa18240
Operon
DOOR ID:
112066
nfa18220,
nfa18230,
nfa18240
View Structure
5
2305742-2305877
(+)
cobalamin
2305978-2307517 (+)
nfa21350
nfa21350
Operon
DOOR ID:
112128
nfa21350,
nfa21360,
nfa21370,
nfa21380,
nfa21390,
nfa21400
View Structure
6
2650089-2650187
(+)
glycine
2650352-2653157 (+)
gcvP
nfa24900
Single gene
DOOR ID:
1630776
nfa24900
(gcvP)
View Structure
7
5617005-5617130
(+)
TPP
5618955-5619750 (+)
nfa53170
nfa53170
Single gene
DOOR ID:
1631825
nfa53170
View Structure
8
5665528-5665640
(-)
SAM-IV
5665096-5665513 (-)
nfa53600
nfa53600
Operon
DOOR ID:
112817
nfa53590
(metZ)
,
nfa53600
View Structure
9
5934822-5934993
(-)
ydaO-yuaA
5934154-5934805 (-)
nfa55950
nfa55950
Operon
DOOR ID:
112868
nfa55940,
nfa55950
View Structure
Genome:
Nocardia farcinica IFM 10152
(
NC_006361.1
);
Phylum:
Actinobacteria
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