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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
772307-772458
(+)
FMN
772597-773320 (+)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
BPSL0678
Single gene
DOOR ID:
1627808
BPSL0678
(ribB)
View Structure
2
1133342-1133609
(+)
cobalamin
1133677-1135735 (+)
BPSL0976
Putative outer membrane receptor protein
BPSL0976
Operon
DOOR ID:
110609
BPSL0976,
BPSL0977,
BPSL0978,
BPSL0979
(cobT)
,
BPSL0980
(cobS)
,
BPSL0981
View Structure
3
1359254-1359300
(+)
mini-ykkC
1359323-1359644 (+)
sugE
BPSL1177
Single gene
DOOR ID:
1627993
BPSL1177
(sugE)
View Structure
4
1504117-1504234
(-)
TPP
1502062-1503994 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
BPSL1290
Single gene
DOOR ID:
1628026
BPSL1290
(thiC)
View Structure
5
2072691-2072897
(+)
cobalamin
2073000-2074449 (+)
BPSL1759
Putative oxidoreductase
BPSL1759
Operon
DOOR ID:
110765
BPSL1759,
BPSL1760
(cobH)
,
BPSL1761
(cobI)
View Structure
6
2090548-2090807
(-)
cobalamin
2089147-2090209 (-)
hoxN
Nickel/cobalt efflux system
BPSL1770
Operon
DOOR ID:
110767
BPSL1768
(cobN)
,
BPSL1769
(cobW)
,
BPSL1770
(hoxN)
View Structure
7
2090966-2091119
(+)
cobalamin
2091313-2091766 (+)
BPSL1771
Putative cobalamin biosynthesis related protein
BPSL1771
Operon
DOOR ID:
110768
BPSL1771,
BPSL1772
(cobO)
,
BPSL1773
(cobB)
View Structure
8
3066135-3066271
(+)
yybP-ykoY
3066347-3066920 (+)
BPSL2542
Putative membrane protein
BPSL2542
Single gene
DOOR ID:
1628401
BPSL2542
View Structure
9
3298300-3298400
(-)
ZMP-ZTP
3296908-3298156 (-)
glyA
Serine hydroxymethyltransferase 1 (SHMT 1) (Serine methylase 1)
BPSL2758
Operon
DOOR ID:
110977
BPSL2757
(nrdR)
,
BPSL2758
(glyA)
View Structure
10
3753386-3753517
(-)
TPP
3752026-3753154 (-)
thiO
Putative thiamine biosynthesis oxidoreductase ThiO
BPSL3154
Operon
DOOR ID:
111063
BPSL3147,
BPSL3148,
BPSL3149,
BPSL3150,
BPSL3151
(thiE)
,
BPSL3152
(thiG)
,
BPSL3153
(thiS)
,
BPSL3154
(thiO)
View Structure
11
3907728-3907867
(-)
SAH
3906271-3907693 (-)
ahcY
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
BPSL3290
Operon
DOOR ID:
111091
BPSL3288
(metF)
,
BPSL3289,
BPSL3290
(ahcY)
View Structure
12
3984000-3984109
(+)
glycine
3984375-3985494 (+)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
BPSL3360
Operon
DOOR ID:
111108
BPSL3360
(gcvT)
,
BPSL3361
(gcvH)
View Structure
13
3984142-3984278
(+)
glycine
3984375-3985494 (+)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
BPSL3360
Operon
DOOR ID:
111108
BPSL3360
(gcvT)
,
BPSL3361
(gcvH)
View Structure
Genome:
Burkholderia pseudomallei K96243 chromosome I
(
NC_006350.1
);
Phylum:
Betaproteobacteria
a:14:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_006350.1";i:2;s:45:"Burkholderia pseudomallei K96243 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"772307-772458";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"772597-773320";i:10;s:1:"+";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:8:"BPSL0678";i:14;s:11:"Single gene";i:15;s:7:"1627808";i:16;s:14:"BPSL0678(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_006350.1";i:2;s:45:"Burkholderia pseudomallei K96243 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1133342-1133609";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1133677-1135735";i:10;s:1:"+";i:11;s:8:"BPSL0976";i:12;s:40:"Putative outer membrane receptor protein";i:13;s:8:"BPSL0976";i:14;s:6:"Operon";i:15;s:6:"110609";i:16;s:65:"BPSL0976;BPSL0977;BPSL0978;BPSL0979(cobT);BPSL0980(cobS);BPSL0981";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_006350.1";i:2;s:45:"Burkholderia pseudomallei K96243 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1359254-1359300";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"1359323-1359644";i:10;s:1:"+";i:11;s:4:"sugE";i:12;s:0:"";i:13;s:8:"BPSL1177";i:14;s:11:"Single gene";i:15;s:7:"1627993";i:16;s:14:"BPSL1177(sugE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_006350.1";i:2;s:45:"Burkholderia pseudomallei K96243 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1504117-1504234";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1502062-1503994";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:8:"BPSL1290";i:14;s:11:"Single gene";i:15;s:7:"1628026";i:16;s:14:"BPSL1290(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_006350.1";i:2;s:45:"Burkholderia pseudomallei K96243 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2072691-2072897";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2073000-2074449";i:10;s:1:"+";i:11;s:8:"BPSL1759";i:12;s:23:"Putative oxidoreductase";i:13;s:8:"BPSL1759";i:14;s:6:"Operon";i:15;s:6:"110765";i:16;s:38:"BPSL1759;BPSL1760(cobH);BPSL1761(cobI)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_006350.1";i:2;s:45:"Burkholderia pseudomallei K96243 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2090548-2090807";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2089147-2090209";i:10;s:1:"-";i:11;s:4:"hoxN";i:12;s:27:"Nickel/cobalt efflux system";i:13;s:8:"BPSL1770";i:14;s:6:"Operon";i:15;s:6:"110767";i:16;s:44:"BPSL1768(cobN);BPSL1769(cobW);BPSL1770(hoxN)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_006350.1";i:2;s:45:"Burkholderia pseudomallei K96243 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2090966-2091119";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2091313-2091766";i:10;s:1:"+";i:11;s:8:"BPSL1771";i:12;s:47:"Putative cobalamin biosynthesis related protein";i:13;s:8:"BPSL1771";i:14;s:6:"Operon";i:15;s:6:"110768";i:16;s:38:"BPSL1771;BPSL1772(cobO);BPSL1773(cobB)";i:17;s:43:"cobalamin biosynthetic process [GO:0009236]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_006350.1";i:2;s:45:"Burkholderia pseudomallei K96243 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3066135-3066271";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"3066347-3066920";i:10;s:1:"+";i:11;s:8:"BPSL2542";i:12;s:25:"Putative membrane protein";i:13;s:8:"BPSL2542";i:14;s:11:"Single gene";i:15;s:7:"1628401";i:16;s:8:"BPSL2542";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_006350.1";i:2;s:45:"Burkholderia pseudomallei K96243 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3298300-3298400";i:6;s:1:"-";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:15:"3296908-3298156";i:10;s:1:"-";i:11;s:4:"glyA";i:12;s:64:"Serine hydroxymethyltransferase 1 (SHMT 1) (Serine methylase 1) ";i:13;s:8:"BPSL2758";i:14;s:6:"Operon";i:15;s:6:"110977";i:16;s:29:"BPSL2757(nrdR);BPSL2758(glyA)";i:17;s:100:"glycine biosynthetic process from serine [GO:0019264]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_006350.1";i:2;s:45:"Burkholderia pseudomallei K96243 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3753386-3753517";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3752026-3753154";i:10;s:1:"-";i:11;s:4:"thiO";i:12;s:50:"Putative thiamine biosynthesis oxidoreductase ThiO";i:13;s:8:"BPSL3154";i:14;s:6:"Operon";i:15;s:6:"111063";i:16;s:95:"BPSL3147;BPSL3148;BPSL3149;BPSL3150;BPSL3151(thiE);BPSL3152(thiG);BPSL3153(thiS);BPSL3154(thiO)";i:17;s:43:"D-amino acid metabolic process [GO:0046416]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_006350.1";i:2;s:45:"Burkholderia pseudomallei K96243 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3907728-3907867";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"3906271-3907693";i:10;s:1:"-";i:11;s:4:"ahcY";i:12;s:73:"Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)";i:13;s:8:"BPSL3290";i:14;s:6:"Operon";i:15;s:6:"111091";i:16;s:38:"BPSL3288(metF);BPSL3289;BPSL3290(ahcY)";i:17;s:96:"one-carbon metabolic process [GO:0006730]; S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_006350.1";i:2;s:45:"Burkholderia pseudomallei K96243 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3984000-3984109";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"3984375-3985494";i:10;s:1:"+";i:11;s:4:"gcvT";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:8:"BPSL3360";i:14;s:6:"Operon";i:15;s:6:"111108";i:16;s:29:"BPSL3360(gcvT);BPSL3361(gcvH)";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_006350.1";i:2;s:45:"Burkholderia pseudomallei K96243 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3984142-3984278";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"3984375-3985494";i:10;s:1:"+";i:11;s:4:"gcvT";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:8:"BPSL3360";i:14;s:6:"Operon";i:15;s:6:"111108";i:16;s:29:"BPSL3360(gcvT);BPSL3361(gcvH)";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}}
