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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
247640-247791
(+)
FMN
247930-248653 (+)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
BMA0230
Single gene
DOOR ID:
1626001
BMA0230
(ribB)
View Structure
2
491336-491472
(+)
yybP-ykoY
491548-492121 (+)
BMA0464
Membrane protein; putative
BMA0464
Single gene
DOOR ID:
1626218
BMA0464
View Structure
3
707548-707816
(+)
cobalamin
707884-709942 (+)
BMA0685
Vitamin B12 receptor BtuB; putative
BMA0685
Operon
DOOR ID:
1306997
BMA0685,
BMA0686,
BMA0687,
BMA0688
(cobT)
,
BMA0689
(cobS)
,
BMA0690,
BMA0691
View Structure
4
1203674-1203880
(+)
cobalamin
1203983-1205432 (+)
BMA1161
Nitrite/sulfite reductase domain protein
BMA1161
Operon
DOOR ID:
1307079
BMA1161,
BMA1162
(cobH)
,
BMA1163
(cobI)
View Structure
5
1221225-1221484
(-)
cobalamin
1219839-1220901 (-)
BMA1172
Nickel/cobalt efflux system
BMA1172
Single gene
DOOR ID:
1625474
BMA1172
View Structure
6
1221643-1221795
(+)
cobalamin
1222500-1223103 (+)
cobO
Cob(I)yrinic acid a;c-diamide adenosyltransferase (7) (Cob(I)alamin adenosyltransferase) (Corrinoid adenosyltransferase)
BMA1175
Operon
DOOR ID:
1307082
BMA1174,
BMA1175
(cobO)
,
BMA1176
(cobB)
View Structure
7
1960175-1960221
(-)
mini-ykkC
1959830-1960151 (-)
sugE
BMA1870
Single gene
DOOR ID:
1626319
BMA1870
(sugE)
View Structure
8
2172237-2172337
(-)
ZMP-ZTP
2170845-2172093 (-)
glyA
Serine hydroxymethyltransferase 1 (SHMT 1) (Serine methylase 1)
BMA2075
Operon
DOOR ID:
1307257
BMA2074
(nrdR)
,
BMA2075
(glyA)
View Structure
9
2819281-2819412
(-)
TPP
2817921-2819055 (-)
BMA2730
Oxidoreductase; FAD-binding
BMA2730
Operon
DOOR ID:
1307393
BMA2728
(thiG)
,
BMA2729,
BMA2730
View Structure
10
2934753-2934892
(-)
SAH
2933296-2934718 (-)
ahcY
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
BMA2842
Single gene
DOOR ID:
1625831
BMA2842
(ahcY)
View Structure
11
3101131-3101267
(-)
glycine
3099914-3101033 (-)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
BMA2994.1
Operon
DOOR ID:
1307438
BMA2994
(gcvH)
,
BMA2994.1
(gcvT)
View Structure
12
3101300-3101409
(-)
glycine
3099914-3101033 (-)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
BMA2994.1
Operon
DOOR ID:
1307438
BMA2994
(gcvH)
,
BMA2994.1
(gcvT)
View Structure
13
3183744-3183861
(+)
TPP
3183983-3185915 (+)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
BMA3090
Single gene
DOOR ID:
1625743
BMA3090
(thiC)
View Structure
Genome:
Burkholderia mallei ATCC 23344 chromosome I
(
NC_006348.1
);
Phylum:
Betaproteobacteria
a:14:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_006348.1";i:2;s:43:"Burkholderia mallei ATCC 23344 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"247640-247791";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"247930-248653";i:10;s:1:"+";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:7:"BMA0230";i:14;s:11:"Single gene";i:15;s:7:"1626001";i:16;s:13:"BMA0230(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_006348.1";i:2;s:43:"Burkholderia mallei ATCC 23344 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"491336-491472";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:13:"491548-492121";i:10;s:1:"+";i:11;s:7:"BMA0464";i:12;s:26:"Membrane protein; putative";i:13;s:7:"BMA0464";i:14;s:11:"Single gene";i:15;s:7:"1626218";i:16;s:7:"BMA0464";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_006348.1";i:2;s:43:"Burkholderia mallei ATCC 23344 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"707548-707816";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"707884-709942";i:10;s:1:"+";i:11;s:7:"BMA0685";i:12;s:35:"Vitamin B12 receptor BtuB; putative";i:13;s:7:"BMA0685";i:14;s:6:"Operon";i:15;s:7:"1306997";i:16;s:67:"BMA0685;BMA0686;BMA0687;BMA0688(cobT);BMA0689(cobS);BMA0690;BMA0691";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_006348.1";i:2;s:43:"Burkholderia mallei ATCC 23344 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1203674-1203880";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1203983-1205432";i:10;s:1:"+";i:11;s:7:"BMA1161";i:12;s:40:"Nitrite/sulfite reductase domain protein";i:13;s:7:"BMA1161";i:14;s:6:"Operon";i:15;s:7:"1307079";i:16;s:35:"BMA1161;BMA1162(cobH);BMA1163(cobI)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_006348.1";i:2;s:43:"Burkholderia mallei ATCC 23344 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1221225-1221484";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1219839-1220901";i:10;s:1:"-";i:11;s:7:"BMA1172";i:12;s:27:"Nickel/cobalt efflux system";i:13;s:7:"BMA1172";i:14;s:11:"Single gene";i:15;s:7:"1625474";i:16;s:7:"BMA1172";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_006348.1";i:2;s:43:"Burkholderia mallei ATCC 23344 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1221643-1221795";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1222500-1223103";i:10;s:1:"+";i:11;s:4:"cobO";i:12;s:120:"Cob(I)yrinic acid a;c-diamide adenosyltransferase (7) (Cob(I)alamin adenosyltransferase) (Corrinoid adenosyltransferase)";i:13;s:7:"BMA1175";i:14;s:6:"Operon";i:15;s:7:"1307082";i:16;s:35:"BMA1174;BMA1175(cobO);BMA1176(cobB)";i:17;s:108:"cobalamin biosynthetic process [GO:0009236]; porphyrin-containing compound biosynthetic process [GO:0006779]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_006348.1";i:2;s:43:"Burkholderia mallei ATCC 23344 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1960175-1960221";i:6;s:1:"-";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"1959830-1960151";i:10;s:1:"-";i:11;s:4:"sugE";i:12;s:0:"";i:13;s:7:"BMA1870";i:14;s:11:"Single gene";i:15;s:7:"1626319";i:16;s:13:"BMA1870(sugE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_006348.1";i:2;s:43:"Burkholderia mallei ATCC 23344 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2172237-2172337";i:6;s:1:"-";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:15:"2170845-2172093";i:10;s:1:"-";i:11;s:4:"glyA";i:12;s:64:"Serine hydroxymethyltransferase 1 (SHMT 1) (Serine methylase 1) ";i:13;s:7:"BMA2075";i:14;s:6:"Operon";i:15;s:7:"1307257";i:16;s:27:"BMA2074(nrdR);BMA2075(glyA)";i:17;s:100:"glycine biosynthetic process from serine [GO:0019264]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_006348.1";i:2;s:43:"Burkholderia mallei ATCC 23344 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2819281-2819412";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2817921-2819055";i:10;s:1:"-";i:11;s:7:"BMA2730";i:12;s:27:"Oxidoreductase; FAD-binding";i:13;s:7:"BMA2730";i:14;s:6:"Operon";i:15;s:7:"1307393";i:16;s:29:"BMA2728(thiG);BMA2729;BMA2730";i:17;s:43:"D-amino acid metabolic process [GO:0046416]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_006348.1";i:2;s:43:"Burkholderia mallei ATCC 23344 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2934753-2934892";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"2933296-2934718";i:10;s:1:"-";i:11;s:4:"ahcY";i:12;s:73:"Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)";i:13;s:7:"BMA2842";i:14;s:11:"Single gene";i:15;s:7:"1625831";i:16;s:13:"BMA2842(ahcY)";i:17;s:96:"one-carbon metabolic process [GO:0006730]; S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_006348.1";i:2;s:43:"Burkholderia mallei ATCC 23344 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3101131-3101267";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"3099914-3101033";i:10;s:1:"-";i:11;s:4:"gcvT";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:9:"BMA2994.1";i:14;s:6:"Operon";i:15;s:7:"1307438";i:16;s:29:"BMA2994(gcvH);BMA2994.1(gcvT)";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_006348.1";i:2;s:43:"Burkholderia mallei ATCC 23344 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3101300-3101409";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"3099914-3101033";i:10;s:1:"-";i:11;s:4:"gcvT";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:9:"BMA2994.1";i:14;s:6:"Operon";i:15;s:7:"1307438";i:16;s:29:"BMA2994(gcvH);BMA2994.1(gcvT)";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_006348.1";i:2;s:43:"Burkholderia mallei ATCC 23344 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3183744-3183861";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3183983-3185915";i:10;s:1:"+";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:7:"BMA3090";i:14;s:11:"Single gene";i:15;s:7:"1625743";i:16;s:13:"BMA3090(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}}
