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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
726416-726511
(-)
TPP
724196-726416 (-)
BF0615
BF0615
Operon
DOOR ID:
109122
BF0613,
BF0614,
BF0615
View Structure
2
1825658-1825866
(-)
cobalamin
1823451-1825488 (-)
BF1569
Outer membrane vitamin B12 receptor protein
BF1569
Operon
DOOR ID:
109336
BF1567,
BF1568,
BF1569,
BF1570
View Structure
3
2881925-2882136
(-)
cobalamin
2881608-2881860 (-)
BF2508
BF2508
Operon
DOOR ID:
109541
BF2501,
BF2502,
BF2503,
BF2504,
BF2505,
BF2506,
BF2507,
BF2508
View Structure
4
2882420-2882667
(+)
cobalamin
2882668-2884795 (+)
BF2510
Putative TonB-dependent outer membrane protein
BF2510
Operon
DOOR ID:
109542
BF2510,
BF2511,
BF2512,
BF2513,
BF2514,
BF2515,
BF2516,
BF2517,
BF2518,
BF2519,
BF2520,
BF2521
View Structure
5
2909526-2909618
(+)
TPP
2909889-2910504 (+)
BF2529
Thiamine-phosphate synthase (TP synthase) (TPS) (Thiamine-phosphate pyrophosphorylase) (TMP pyrophosphorylase) (TMP-PPase)
BF2529
Operon
DOOR ID:
109544
BF2528,
BF2529
(thiE)
,
BF2530
(thiG)
,
BF2531,
BF2532,
BF2533
(thiH)
,
BF2534,
BF2535
View Structure
6
3073630-3073837
(-)
cobalamin
3072588-3073566 (-)
BF2674
BF2674
Operon
DOOR ID:
1625109
BF2674
View Structure
7
3096302-3096524
(+)
cobalamin
3096588-3099108 (+)
BF2693
Ribonucleoside-diphosphate reductase
BF2693
Operon
DOOR ID:
109577
BF2693,
BF2694
(nrdF)
View Structure
8
3437374-3437566
(-)
cobalamin
3436301-3437219 (-)
BF3033
BF3033
Operon
DOOR ID:
109644
BF3025,
BF3026,
BF3027,
BF3028,
BF3029,
BF3030,
BF3031,
BF3032,
BF3033
View Structure
9
4035424-4035643
(+)
cobalamin
4035780-4037295 (+)
BF3529
Pyruvate carboxylase subunit A
BF3529
Operon
DOOR ID:
109752
BF3529,
BF3530,
BF3531
View Structure
10
4199370-4199553
(+)
cobalamin
4199586-4201980 (+)
BF3692
Anaerobic ribonucleoside-triphosphate reductase
BF3692
Operon
DOOR ID:
109787
BF3692,
BF3693
View Structure
Genome:
Bacteroides fragilis YCH46 DNA
(
NC_006347.1
);
Phylum:
Bacteroidetes/Chlorobi group
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thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_006347.1";i:2;s:30:"Bacteroides fragilis YCH46 DNA";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"3073630-3073837";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3072588-3073566";i:10;s:1:"-";i:11;s:6:"BF2674";i:12;s:0:"";i:13;s:6:"BF2674";i:14;s:6:"Operon";i:15;s:7:"1625109";i:16;s:6:"BF2674";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_006347.1";i:2;s:30:"Bacteroides fragilis YCH46 DNA";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"3096302-3096524";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3096588-3099108";i:10;s:1:"+";i:11;s:6:"BF2693";i:12;s:37:"Ribonucleoside-diphosphate reductase ";i:13;s:6:"BF2693";i:14;s:6:"Operon";i:15;s:6:"109577";i:16;s:19:"BF2693;BF2694(nrdF)";i:17;s:28:"DNA replication [GO:0006260]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_006347.1";i:2;s:30:"Bacteroides fragilis YCH46 DNA";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"3437374-3437566";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3436301-3437219";i:10;s:1:"-";i:11;s:6:"BF3033";i:12;s:0:"";i:13;s:6:"BF3033";i:14;s:6:"Operon";i:15;s:6:"109644";i:16;s:62:"BF3025;BF3026;BF3027;BF3028;BF3029;BF3030;BF3031;BF3032;BF3033";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_006347.1";i:2;s:30:"Bacteroides fragilis YCH46 DNA";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"4035424-4035643";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4035780-4037295";i:10;s:1:"+";i:11;s:6:"BF3529";i:12;s:30:"Pyruvate carboxylase subunit A";i:13;s:6:"BF3529";i:14;s:6:"Operon";i:15;s:6:"109752";i:16;s:20:"BF3529;BF3530;BF3531";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_006347.1";i:2;s:30:"Bacteroides fragilis YCH46 DNA";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"4199370-4199553";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4199586-4201980";i:10;s:1:"+";i:11;s:6:"BF3692";i:12;s:47:"Anaerobic ribonucleoside-triphosphate reductase";i:13;s:6:"BF3692";i:14;s:6:"Operon";i:15;s:6:"109787";i:16;s:13:"BF3692;BF3693";i:17;s:28:"DNA replication [GO:0006260]";i:18;s:15:"View Structure ";}}
