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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
157517-157672
(+)
glmS
157863-159666 (+)
glmS
BCZK0152
Operon
DOOR ID:
106678
BCZK0151,
BCZK0152
(glmS)
View Structure
2
176990-177104
(-)
SAM
176092-176905 (-)
BCZK0167
BCZK0167
Operon
DOOR ID:
106681
BCZK0165,
BCZK0166,
BCZK0167
View Structure
3
185418-185523
(+)
SAM
185659-186577 (+)
oppB
BCZK0176
Operon
DOOR ID:
106683
BCZK0176
(oppB)
,
BCZK0177
(oppC)
,
BCZK0178
(oppD)
,
BCZK0179
(oppF)
,
BCZK0180
(oppA)
View Structure
4
198409-198515
(-)
SAM
196635-198276 (-)
oppA
BCZK0186
Single gene
DOOR ID:
1621759
BCZK0186
(oppA)
View Structure
5
265875-265976
(+)
purine
266132-267680 (+)
guaA
BCZK0243
Single gene
DOOR ID:
1621728
BCZK0243
(guaA)
View Structure
6
267835-267936
(+)
purine
268064-269390 (+)
BCZK0244
BCZK0244
Single gene
DOOR ID:
1621727
BCZK0244
View Structure
7
309094-309195
(+)
purine
309305-309791 (+)
purE
BCZK0263
Operon
DOOR ID:
106696
BCZK0263
(purE)
,
BCZK0264
(purK)
,
BCZK0265
(purB)
,
BCZK0266
(purC)
,
BCZK0267
(purS)
,
BCZK0268
(purQ)
,
BCZK0269
(purL)
,
BCZK0270
(purF)
,
BCZK0271
(purM)
,
BCZK0272
(purN)
,
BCZK0273
(purH)
,
BCZK0274
(purD)
View Structure
8
334370-334474
(+)
SAM
334597-335617 (+)
BCZK0284
BCZK0284
Operon
DOOR ID:
106698
BCZK0284,
BCZK0285,
BCZK0286
View Structure
9
357361-357462
(-)
purine
355962-357159 (-)
nupC
BCZK0304
Single gene
DOOR ID:
1621706
BCZK0304
(nupC)
View Structure
10
387410-387522
(-)
SAM
386691-387324 (-)
BCZK0332
BCZK0332
Single gene
DOOR ID:
1621692
BCZK0332
View Structure
11
410330-410439
(+)
TPP
410511-411318 (+)
thiM
BCZK0348
Operon
DOOR ID:
106710
BCZK0348
(thiM)
,
BCZK0349
(thiE)
View Structure
12
414665-414749
(+)
c-di-GMP-I
414890-416630 (+)
cheW
BCZK0352
single gene
DOOR ID:
1621679
BCZK0352
(cheW)
View Structure
13
416692-416793
(+)
TPP
416893-417214 (+)
BCZK0353
BCZK0353
Operon
DOOR ID:
106711
BCZK0353,
BCZK0354,
BCZK0355,
BCZK0356
View Structure
14
742060-742172
(+)
TPP
742420-743116 (+)
tenA
BCZK0635
Operon
DOOR ID:
106763
BCZK0635
(tenA)
,
BCZK0636,
BCZK0637,
BCZK0638,
BCZK0639
(thiE)
,
BCZK0640
(goxB)
,
BCZK0641
(thiS)
,
BCZK0642
(thiG)
,
BCZK0643
(thiF)
,
BCZK0644
(thiD)
View Structure
15
742233-742336
(+)
TPP
742420-743116 (+)
tenA
BCZK0635
Operon
DOOR ID:
106763
BCZK0635
(tenA)
,
BCZK0636,
BCZK0637,
BCZK0638,
BCZK0639
(thiE)
,
BCZK0640
(goxB)
,
BCZK0641
(thiS)
,
BCZK0642
(thiG)
,
BCZK0643
(thiF)
,
BCZK0644
(thiD)
View Structure
16
750233-750380
(+)
ydaO-yuaA
750440-750860 (+)
BCZK0645
BCZK0645
Single gene
DOOR ID:
1621545
BCZK0645
View Structure
17
751369-751514
(+)
ydaO-yuaA
751814-753482 (+)
kdpA
BCZK0646
Operon
DOOR ID:
106764
BCZK0646
(kdpA)
,
BCZK0647
(kdpB)
,
BCZK0648
(kdpC)
,
BCZK0649
(kdpD)
View Structure
18
851827-852008
(-)
lysine
850254-851679 (-)
arcD
BCZK0749
Operon
DOOR ID:
106785
BCZK0748,
BCZK0749
(arcD)
View Structure
19
1304451-1304615
(-)
yybP-ykoY
1303564-1304359 (-)
BCZK1202
BCZK1202
Single gene
DOOR ID:
1621269
BCZK1202
View Structure
20
1334236-1334279
(+)
PreQ1
1334372-1335035 (+)
BCZK1232
BCZK1232
Operon
DOOR ID:
106868
BCZK1232,
BCZK1233
(ygcM)
,
BCZK1234,
BCZK1235
(folE)
View Structure
21
1395586-1395767
(+)
lysine
1395947-1397264 (+)
lysA
BCZK1303
Single gene
DOOR ID:
1621223
BCZK1303
(lysA)
View Structure
22
1397382-1397490
(+)
SAM
1397793-1398498 (+)
cysH
BCZK1304
Operon
DOOR ID:
106879
BCZK1304
(cysH)
,
BCZK1305
(sat)
,
BCZK1306,
BCZK1307
(nirA)
,
BCZK1308
View Structure
23
1410136-1410241
(+)
SAM
1410336-1411653 (+)
nhaC
BCZK1316
Single gene
DOOR ID:
1621220
BCZK1316
(nhaC)
View Structure
24
1457677-1457816
(+)
FMN
1457978-1458557 (+)
ypaA
BCZK1363
Single gene
DOOR ID:
1621193
BCZK1363
(ypaA)
View Structure
25
1532482-1532583
(+)
purine
1532690-1533284 (+)
xpt
BCZK1448
Operon
DOOR ID:
106908
BCZK1448
(xpt)
,
BCZK1449
(pbuX)
View Structure
26
1545190-1545353
(+)
ykoK
1545698-1546424 (+)
BCZK1460
BCZK1460
Single gene
DOOR ID:
1621155
BCZK1460
View Structure
27
1567281-1567325
(+)
PreQ1
1567331-1567817 (+)
BCZK1471
BCZK1471
Single gene
DOOR ID:
1621145
BCZK1471
View Structure
28
1709028-1709214
(-)
lysine
1707598-1708828 (-)
dapG
BCZK1623
Single gene
DOOR ID:
1621088
BCZK1623
(dapG)
View Structure
29
1793577-1793723
(+)
ydaO-yuaA
1793867-1795694 (+)
BCZK1697
BCZK1697
Single gene
DOOR ID:
1621048
BCZK1697
View Structure
30
2269790-2269909
(-)
glycine
2268314-2269682 (-)
BCZK2140
BCZK2140
Single gene
DOOR ID:
1620823
BCZK2140
View Structure
31
2490752-2490857
(+)
TPP
2490980-2491670 (+)
tenA
BCZK2357
Single gene
DOOR ID:
1620687
BCZK2357
(tenA)
View Structure
32
2520382-2520497
(+)
SAM
2520636-2521185 (+)
BCZK2384
BCZK2384
Operon
DOOR ID:
107057
BCZK2384,
BCZK2385,
BCZK2386
(cbiQ)
View Structure
33
2909816-2910008
(+)
lysine
2910120-2911587 (+)
lysP
BCZK2794
Operon
DOOR ID:
107138
BCZK2794
(lysP)
,
BCZK2795,
BCZK2796
(yhaZ)
View Structure
34
3037454-3037555
(-)
SAM
3036159-3037365 (-)
amaA
BCZK2908
Single gene
DOOR ID:
1620414
BCZK2908
(amaA)
View Structure
35
3134506-3134604
(-)
SAM
3134147-3134405 (-)
BCZK3004
BCZK3004
Single gene
DOOR ID:
1620352
BCZK3004
View Structure
36
3187260-3187401
(+)
ydaO-yuaA
3187697-3188453 (-)
ubiE
BCZK3058
Operon
DOOR ID:
107177
BCZK3058
(ubiE)
,
BCZK3059
View Structure
37
3685751-3685852
(-)
purine
3684791-3685517 (-)
BCZK3552
BCZK3552
Single gene
DOOR ID:
1620094
BCZK3552
View Structure
38
3895737-3895925
(+)
cobalamin
3896052-3898341 (+)
metE
BCZK3760
Single gene
DOOR ID:
1620022
BCZK3760
(metE)
View Structure
39
3927096-3927237
(-)
SAM
3925823-3927005 (-)
mtnK
BCZK3790
Operon
DOOR ID:
107318
BCZK3789
(mtnA)
,
BCZK3790
(mtnK)
View Structure
40
3929431-3929538
(+)
SAM
3929602-3930847 (+)
mtnW
BCZK3793
Operon
DOOR ID:
107319
BCZK3793
(mtnW)
,
BCZK3794
(mtnX)
,
BCZK3795
(mtnB)
,
BCZK3796
View Structure
41
3991406-3991549
(+)
FMN
3991860-3992973 (+)
ribD
BCZK3865
Operon
DOOR ID:
107330
BCZK3865
(ribD)
,
BCZK3866
(ribE)
,
BCZK3867
(ribA)
,
BCZK3868
(ribH)
View Structure
42
4116155-4116264
(-)
SAM
4114251-4116084 (-)
metE
BCZK4006
Operon
DOOR ID:
107356
BCZK4004
(murG)
,
BCZK4005
(metH)
,
BCZK4006
(metE)
View Structure
43
4116467-4116576
(+)
SAM
4116670-4117783 (+)
metC
BCZK4007
Operon
DOOR ID:
107357
BCZK4007
(metC)
,
BCZK4008
(metC)
View Structure
44
4612708-4612829
(-)
SAM
4611338-4612538 (-)
metK
BCZK4517
Single gene
DOOR ID:
1619715
BCZK4517
(metK)
View Structure
45
4650744-4650845
(+)
TPP
4650929-4651598 (+)
BCZK4562
BCZK4562
Single gene
DOOR ID:
1619688
BCZK4562
View Structure
46
4808742-4808849
(-)
SAM
4807537-4808563 (-)
BCZK4711
BCZK4711
Operon
DOOR ID:
107508
BCZK4708,
BCZK4709,
BCZK4710,
BCZK4711
View Structure
47
4897977-4898036
(+)
fluoride
4898081-4898495 (+)
ccrB
BCZK4802
Operon
DOOR ID:
107528
BCZK4802
(ccrB)
,
BCZK4803
(ccrB)
View Structure
48
5012811-5012926
(-)
TPP
5010937-5012698 (-)
thiC
BCZK4920
Single gene
DOOR ID:
1619539
BCZK4920
(thiC)
View Structure
49
5014547-5014662
(-)
TPP
5013784-5014087 (-)
BCZK4923
BCZK4923
Single gene
DOOR ID:
1619535
BCZK4923
View Structure
50
5213138-5213243
(-)
SAM
5211746-5213045 (-)
cysD
BCZK5104
Operon
DOOR ID:
107594
BCZK5103
(metA)
,
BCZK5104
(cysD)
View Structure
Genome:
Bacillus cereus E33L
(
NC_006274.1
);
Phylum:
Firmicutes
a:51:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_006274.1";i:2;s:21:"Bacillus cereus E33L ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"157517-157672";i:6;s:1:"+";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:13:"157863-159666";i:10;s:1:"+";i:11;s:4:"glmS";i:12;s:0:"";i:13;s:8:"BCZK0152";i:14;s:6:"Operon";i:15;s:6:"106678";i:16;s:23:"BCZK0151;BCZK0152(glmS)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_006274.1";i:2;s:21:"Bacillus cereus E33L ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"176990-177104";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"176092-176905";i:10;s:1:"-";i:11;s:8:"BCZK0167";i:12;s:0:"";i:13;s:8:"BCZK0167";i:14;s:6:"Operon";i:15;s:6:"106681";i:16;s:26:"BCZK0165;BCZK0166;BCZK0167";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_006274.1";i:2;s:21:"Bacillus cereus E33L ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"185418-185523";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"185659-186577";i:10;s:1:"+";i:11;s:4:"oppB";i:12;s:0:"";i:13;s:8:"BCZK0176";i:14;s:6:"Operon";i:15;s:6:"106683";i:16;s:74:"BCZK0176(oppB);BCZK0177(oppC);BCZK0178(oppD);BCZK0179(oppF);BCZK0180(oppA)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_006274.1";i:2;s:21:"Bacillus cereus E33L ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"198409-198515";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"196635-198276";i:10;s:1:"-";i:11;s:4:"oppA";i:12;s:0:"";i:13;s:8:"BCZK0186";i:14;s:11:"Single gene";i:15;s:7:"1621759";i:16;s:14:"BCZK0186(oppA)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_006274.1";i:2;s:21:"Bacillus cereus E33L ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"265875-265976";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"266132-267680";i:10;s:1:"+";i:11;s:4:"guaA";i:12;s:0:"";i:13;s:8:"BCZK0243";i:14;s:11:"Single gene";i:15;s:7:"1621728";i:16;s:14:"BCZK0243(guaA)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_006274.1";i:2;s:21:"Bacillus cereus E33L ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"267835-267936";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"268064-269390";i:10;s:1:"+";i:11;s:8:"BCZK0244";i:12;s:0:"";i:13;s:8:"BCZK0244";i:14;s:11:"Single gene";i:15;s:7:"1621727";i:16;s:8:"BCZK0244";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_006274.1";i:2;s:21:"Bacillus cereus E33L ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"309094-309195";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"309305-309791";i:10;s:1:"+";i:11;s:4:"purE";i:12;s:0:"";i:13;s:8:"BCZK0263";i:14;s:6:"Operon";i:15;s:6:"106696";i:16;s:179:"BCZK0263(purE);BCZK0264(purK);BCZK0265(purB);BCZK0266(purC);BCZK0267(purS);BCZK0268(purQ);BCZK0269(purL);BCZK0270(purF);BCZK0271(purM);BCZK0272(purN);BCZK0273(purH);BCZK0274(purD)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_006274.1";i:2;s:21:"Bacillus cereus E33L ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"334370-334474";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"334597-335617";i:10;s:1:"+";i:11;s:8:"BCZK0284";i:12;s:0:"";i:13;s:8:"BCZK0284";i:14;s:6:"Operon";i:15;s:6:"106698";i:16;s:26:"BCZK0284;BCZK0285;BCZK0286";i:17;s:0:"";i:18;s:15:"View Structure 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