Genome: Bacillus licheniformis ATCC 14580 (NC_006270.3); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 183347-183520 (+)glmS183615-185418 (+)glmS

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)
BL02704Single gene

DOOR ID: 1618098
BL02704 (glmS) View Structure
2 378607-378693 (+)c-di-GMP-I378876-389619 (+)lchAA

Lichenysin synthetase A

DOOR ID: 105886
BL01726 (lchAA),
BL01727 (lchAB),
BL01728 (lchAC),
BL01729 (lchAD)
View Structure
3 525352-525495 (+)ydaO-yuaA525594-527415 (+)ydaO

Putative amino acid permease
BL00148Single gene

DOOR ID: 1617806
BL00148 (ydaO) View Structure
4 542499-542640 (+)ydaO-yuaA542714-543959 (+)BL02188

Proton/sodium-glutamate symport protein

DOOR ID: 105914
BL02189 (ydbJ),
BL02190 (ydbK)
View Structure
5 693175-693276 (+)purine693408-694731 (+)pbuG

Hypoxanthine/guanine permease
BL02932Single gene

DOOR ID: 1618260
BL02932 (pbuG) View Structure
6 697032-697134 (+)purine697270-697759 (+)purE

N5-carboxyaminoimidazole ribonucleotide mutase (N5-CAIR mutase) (8) (5-(carboxyamino)imidazole ribonucleotide mutase)

DOOR ID: 105937
BL01476 (purE),
BL01477 (purK),
BL01478 (purB),
BL01479 (purC),
BL01480 (purS),
BL01481 (purQ),
BL01482 (purL),
BL01483 (purF),
BL01484 (purM),
BL01485 (purN),
BL01486 (purH),
BL01487 (purD)
View Structure
7 712467-712553 (+)yybP-ykoY712659-712770 (+)BL01489


DOOR ID: 105938
BL01490 (yybP)
View Structure
8 942184-942292 (+)TPP942439-944215 (+)thiC

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
BL05082Single gene

DOOR ID: 1617851
BL05082 (thiC) View Structure
9 969875-969988 (+)SAM970088-971090 (+)BL03180

Methionine import ATP-binding protein MetN 1

DOOR ID: 105984
BL03178 (yhcJ)
View Structure
10 1207771-1207882 (-)SAM1205860-1207690 (-)yitJ

Homocysteine S-methyltransferase

DOOR ID: 106024
BL01308 (metH),
BL01307 (yitJ)
View Structure
11 1271349-1271457 (+)TPP1271540-1272242 (+)tenA

Aminopyrimidine aminohydrolase

DOOR ID: 106039
BL01592 (tenA),
BL01591 (tenI),
BL01590 (goxB),
BL01589 (thiS),
BL01588 (thiG),
BL01587 (thiF),
BL01586 (yjbV)
View Structure
12 1292297-1292413 (+)SAM1292477-1293602 (+)yjcI

Cys/Met metabolism pyridoxal-phosphate-dependent enzymes

DOOR ID: 106043
BL02660 (yjcI),
BL02659 (yjcJ)
View Structure
13 1406612-1406714 (+)ykkC-yxkD1406774-1407104 (+)ykkC

Probable guanidinium efflux system subunit GdnC

DOOR ID: 106068
BL03755 (ykkC),
BL03754 (ykkD)
View Structure
14 1418450-1418637 (-)cobalamin1416011-1418300 (-)metE

5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)
BL03738Single gene

DOOR ID: 1618493
BL03738 (metE) View Structure
15 1420313-1420477 (+)ykoK1420724-1422080 (+)ykoK

Magnesium transporter MgtE
BL00682Single gene

DOOR ID: 1618496
BL00682 (ykoK) View Structure
16 1471571-1471743 (+)yybP-ykoY1471793-1472561 (+)ykoY

Integral membrane protein
BL03528Single gene

DOOR ID: 1618512
BL03528 (ykoY) View Structure
17 1487512-1487655 (-)SAM1486230-1487427 (-)mtnK

Methylthioribose kinase (MTR kinase) (00)

DOOR ID: 106092
BL03632 (mtnA),
BL03633 (mtnK)
View Structure
18 1489854-1489953 (+)SAM1490037-1491255 (+)mtnW

2;3-diketo-5-methylthiopentyl-1-phosphate enolase (DK-MTP-1-P enolase) (RuBisCO-like protein) (RLP)

DOOR ID: 106093
BL03540 (mtnW),
BL03541 (mtnB),
BL03542 (mtnZ)
View Structure
19 1501859-1501903 (+)PreQ11502041-1502701 (+)queC

7-cyano-7-deazaguanine synthase (0) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein QueC)

DOOR ID: 106096
BL03546 (queC),
BL03547 (queD),
BL03548 (queE),
BL03549 (queF)
View Structure
20 1735723-1735829 (+)SAM1735905-1736049 (+)BL02281

BL02281Single gene

DOOR ID: 1618610
BL02281 View Structure
21 2295837-2295936 (-)purine2295133-2295718 (-)xpt

Xanthine phosphoribosyltransferase (XPRTase) (2)

DOOR ID: 106255
BL00679 (pbuX),
BL00680 (xpt)
View Structure
22 2382216-2382349 (-)FMN2381481-2382060 (-)BL05240

Riboflavin transporter
BL05240Single gene

DOOR ID: 1618840
BL05240 View Structure
23 2409265-2409415 (-)FMN2408067-2409156 (-)ribD

Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]

DOOR ID: 106283
BL01888 (ribH),
BL01889 (ribA),
BL01890 (ribE),
BL01891 (ribD)
View Structure
24 2547465-2547569 (-)glycine2546125-2547220 (-)gcvT

Aminomethyltransferase (0) (Glycine cleavage system T protein)

DOOR ID: 106316
BL01560 (gcvPB),
BL01561 (gcvPA),
BL01562 (gcvT)
View Structure
25 2878198-2878377 (-)lysine2876818-2878048 (-)lysC

BL00324Single gene

DOOR ID: 1619002
BL00324 (lysC) View Structure
26 3063756-3063863 (-)SAM3062874-3063699 (-)BL00013

BL00013Single gene

DOOR ID: 1619068
BL00013 View Structure
27 3080763-3080900 (-)SAM3079227-3080430 (-)metK

S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)
BL02632Single gene

DOOR ID: 1619074
BL02632 (metK) View Structure
28 3125197-3125296 (+)TPP3125407-3125992 (+)yuaJ

Thiamine transporter
BL02511Single gene

DOOR ID: 1619088
BL02511 (yuaJ) View Structure
29 3302657-3302764 (-)SAM3301514-3302540 (-)metN

Methionine import ATP-binding protein MetN 2

DOOR ID: 106477
BL02169 (metQ),
BL02170 (metP),
BL02171 (metN)
View Structure
30 3365915-3366091 (-)lysine3364396-3365800 (-)yvsH

Putative amino acid transporter YvsH
BL00702Single gene

DOOR ID: 1619189
BL00702 (yvsH) View Structure
31 3988958-3989064 (-)ykkC-yxkD3988035-3988872 (-)yxkD

BL05381Single gene

DOOR ID: 1619401
BL05381 (yxkD) View Structure
32 4014505-4014614 (+)SAM4014687-4015818 (+)yxjG

Methionine synthase
BL01934Single gene

DOOR ID: 1619407
BL01934 (yxjG) View Structure
33 4024472-4024573 (+)purine4024592-4024667 (+)BL05384

BL05384Single gene

DOOR ID: 1618051
BL05384 View Structure
34 4037078-4037182 (-)TPP4036279-4036966 (-)BL02647

Aminopyrimidine aminohydrolase

DOOR ID: 106618
BL02651 (ykoC),
BL02650 (ykoD),
BL02648 (ykoE),
View Structure