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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
147318-147580
(+)
cobalamin
147648-149541 (+)
btuB
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
YPTB0125
Operon
DOOR ID:
104271
YPTB0125
(btuB)
,
YPTB0126
(murI)
View Structure
2
350611-350736
(-)
TPP
348432-350478 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
YPTB0290
Operon
DOOR ID:
104307
YPTB0285
(thiH)
,
YPTB0286
(thiG)
,
YPTB0287
(thiS)
,
YPTB0288
(thiF)
,
YPTB0289
(thiE)
,
YPTB0290
(thiC)
View Structure
3
487922-487968
(+)
mini-ykkC
487987-488302 (+)
sugE
YPTB0409
Single gene
DOOR ID:
1614721
YPTB0409
(sugE)
View Structure
4
793561-793698
(-)
TPP
792493-793486 (-)
tbpA
ABC transporter; periplasmic thiamine binding protein tbpA
YPTB0663
Operon
DOOR ID:
104377
YPTB0661
(thiQ)
,
YPTB0662
(thiP)
,
YPTB0663
(tbpA)
View Structure
5
1307099-1307162
(-)
fluoride
1306614-1306998 (-)
ccrB
Putative fluoride ion transporter CrcB 1
YPTB1089
Single gene
DOOR ID:
1615015
YPTB1089
(ccrB)
View Structure
6
1419284-1419430
(+)
MOCO
1420619-1421099 (+)
moaC
Cyclic pyranopterin monophosphate synthase (7) (Molybdenum cofactor biosynthesis protein C)
YPTB1191
Operon
DOOR ID:
104482
YPTB1191
(moaC)
,
YPTB1192
(moaD)
,
YPTB1193
(moaE)
View Structure
7
1981844-1982043
(-)
yybP-ykoY
1981263-1981833 (-)
yebN
Putative manganese efflux pump MntP
YPTB1630
Single gene
DOOR ID:
1615268
YPTB1630
(yebN)
View Structure
8
3340615-3340719
(-)
TPP
3339690-3340491 (-)
thiD
Putative phosphomethylpyrimidine kinase
YPTB2824
Single gene
DOOR ID:
1615786
YPTB2824
(thiD)
View Structure
9
4043205-4043394
(-)
FMN
4042308-4042962 (-)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
YPTB3404
Single gene
DOOR ID:
1616016
YPTB3404
(ribB)
View Structure
Genome:
Yersinia pseudotuberculosis IP 32953
(
NC_006155.1
);
Phylum:
Gammaproteobacteria
a:10:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_006155.1";i:2;s:37:"Yersinia pseudotuberculosis IP 32953 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"147318-147580";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"147648-149541";i:10;s:1:"+";i:11;s:4:"btuB";i:12;s:89:"Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)";i:13;s:8:"YPTB0125";i:14;s:6:"Operon";i:15;s:6:"104271";i:16;s:29:"YPTB0125(btuB);YPTB0126(murI)";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_006155.1";i:2;s:37:"Yersinia pseudotuberculosis IP 32953 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"350611-350736";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"348432-350478";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:8:"YPTB0290";i:14;s:6:"Operon";i:15;s:6:"104307";i:16;s:89:"YPTB0285(thiH);YPTB0286(thiG);YPTB0287(thiS);YPTB0288(thiF);YPTB0289(thiE);YPTB0290(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_006155.1";i:2;s:37:"Yersinia pseudotuberculosis IP 32953 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"487922-487968";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:13:"487987-488302";i:10;s:1:"+";i:11;s:4:"sugE";i:12;s:0:"";i:13;s:8:"YPTB0409";i:14;s:11:"Single gene";i:15;s:7:"1614721";i:16;s:14:"YPTB0409(sugE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_006155.1";i:2;s:37:"Yersinia pseudotuberculosis IP 32953 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"793561-793698";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"792493-793486";i:10;s:1:"-";i:11;s:4:"tbpA";i:12;s:58:"ABC transporter; periplasmic thiamine binding protein tbpA";i:13;s:8:"YPTB0663";i:14;s:6:"Operon";i:15;s:6:"104377";i:16;s:44:"YPTB0661(thiQ);YPTB0662(thiP);YPTB0663(tbpA)";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_006155.1";i:2;s:37:"Yersinia pseudotuberculosis IP 32953 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1307099-1307162";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"1306614-1306998";i:10;s:1:"-";i:11;s:4:"ccrB";i:12;s:40:"Putative fluoride ion transporter CrcB 1";i:13;s:8:"YPTB1089";i:14;s:11:"Single gene";i:15;s:7:"1615015";i:16;s:14:"YPTB1089(ccrB)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_006155.1";i:2;s:37:"Yersinia pseudotuberculosis IP 32953 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1419284-1419430";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"1420619-1421099";i:10;s:1:"+";i:11;s:4:"moaC";i:12;s:91:"Cyclic pyranopterin monophosphate synthase (7) (Molybdenum cofactor biosynthesis protein C)";i:13;s:8:"YPTB1191";i:14;s:6:"Operon";i:15;s:6:"104482";i:16;s:44:"YPTB1191(moaC);YPTB1192(moaD);YPTB1193(moaE)";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_006155.1";i:2;s:37:"Yersinia pseudotuberculosis IP 32953 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1981844-1982043";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1981263-1981833";i:10;s:1:"-";i:11;s:4:"yebN";i:12;s:35:"Putative manganese efflux pump MntP";i:13;s:8:"YPTB1630";i:14;s:11:"Single gene";i:15;s:7:"1615268";i:16;s:14:"YPTB1630(yebN)";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_006155.1";i:2;s:37:"Yersinia pseudotuberculosis IP 32953 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3340615-3340719";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3339690-3340491";i:10;s:1:"-";i:11;s:4:"thiD";i:12;s:40:"Putative phosphomethylpyrimidine kinase ";i:13;s:8:"YPTB2824";i:14;s:11:"Single gene";i:15;s:7:"1615786";i:16;s:14:"YPTB2824(thiD)";i:17;s:42:"thiamine biosynthetic process [GO:0009228]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_006155.1";i:2;s:37:"Yersinia pseudotuberculosis IP 32953 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4043205-4043394";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"4042308-4042962";i:10;s:1:"-";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:8:"YPTB3404";i:14;s:11:"Single gene";i:15;s:7:"1616016";i:16;s:14:"YPTB3404(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}}
