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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
68420-68491
(-)
fluoride
67961-68399 (-)
crcB
Putative fluoride ion transporter CrcB 2
Lxx00690
Operon
DOOR ID:
102967
Lxx00680
(crcB)
,
Lxx00690
(crcB)
View Structure
2
440332-440483
(-)
FMN
439222-440248 (-)
ribD
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
Lxx04370
Operon
DOOR ID:
103028
Lxx04340
(ribH)
,
Lxx04350
(ribA)
,
Lxx04360
(ribC)
,
Lxx04370
(ribD)
View Structure
3
1470206-1470316
(-)
TPP
1469558-1470173 (-)
ykoE
ABC transporter; permease protein
Lxx14240
Operon
DOOR ID:
103203
Lxx14210,
Lxx14220,
Lxx14230,
Lxx14240
(ykoE)
View Structure
4
1921208-1921306
(-)
ZMP-ZTP
1919871-1921164 (-)
glyA
Serine hydroxymethyltransferase (SHMT) (Serine methylase)
Lxx18640
Operon
DOOR ID:
103277
Lxx18620,
Lxx18630
(folD)
,
Lxx18640
(glyA)
View Structure
5
2178596-2178766
(-)
ykoK
2175611-2178290 (-)
Lxx21190
Mg++ transport; ATPase protein
Lxx21190
Operon
DOOR ID:
103318
Lxx21180
(mtgC)
,
Lxx21190
View Structure
Genome:
Leifsonia xyli subsp. xyli str. CTCB07
(
NC_006087.1
);
Phylum:
Actinobacteria
a:6:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_006087.1";i:2;s:39:"Leifsonia xyli subsp. xyli str. CTCB07 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:11:"68420-68491";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:11:"67961-68399";i:10;s:1:"-";i:11;s:4:"crcB";i:12;s:40:"Putative fluoride ion transporter CrcB 2";i:13;s:8:"Lxx00690";i:14;s:6:"Operon";i:15;s:6:"102967";i:16;s:29:"Lxx00680(crcB);Lxx00690(crcB)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_006087.1";i:2;s:39:"Leifsonia xyli subsp. xyli str. CTCB07 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"440332-440483";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"439222-440248";i:10;s:1:"-";i:11;s:4:"ribD";i:12;s:140:"Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]";i:13;s:8:"Lxx04370";i:14;s:6:"Operon";i:15;s:6:"103028";i:16;s:59:"Lxx04340(ribH);Lxx04350(ribA);Lxx04360(ribC);Lxx04370(ribD)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_006087.1";i:2;s:39:"Leifsonia xyli subsp. xyli str. CTCB07 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1470206-1470316";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1469558-1470173";i:10;s:1:"-";i:11;s:4:"ykoE";i:12;s:33:"ABC transporter; permease protein";i:13;s:8:"Lxx14240";i:14;s:6:"Operon";i:15;s:6:"103203";i:16;s:41:"Lxx14210;Lxx14220;Lxx14230;Lxx14240(ykoE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_006087.1";i:2;s:39:"Leifsonia xyli subsp. xyli str. CTCB07 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1921208-1921306";i:6;s:1:"-";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:15:"1919871-1921164";i:10;s:1:"-";i:11;s:4:"glyA";i:12;s:58:"Serine hydroxymethyltransferase (SHMT) (Serine methylase) ";i:13;s:8:"Lxx18640";i:14;s:6:"Operon";i:15;s:6:"103277";i:16;s:38:"Lxx18620;Lxx18630(folD);Lxx18640(glyA)";i:17;s:100:"glycine biosynthetic process from serine [GO:0019264]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_006087.1";i:2;s:39:"Leifsonia xyli subsp. xyli str. CTCB07 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2178596-2178766";i:6;s:1:"-";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"2175611-2178290";i:10;s:1:"-";i:11;s:8:"Lxx21190";i:12;s:30:"Mg++ transport; ATPase protein";i:13;s:8:"Lxx21190";i:14;s:6:"Operon";i:15;s:6:"103318";i:16;s:23:"Lxx21180(mtgC);Lxx21190";i:17;s:0:"";i:18;s:15:"View Structure ";}}