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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
133010-133104
(+)
TPP
134787-135018 (+)
PPA0111
PPA0111
Operon
DOOR ID:
102097
PPA0111,
PPA0112
(thiE)
View Structure
2
186523-186626
(+)
TPP
186660-187290 (+)
PPA0156
Putative ABC-type transporter; permease component
PPA0156
Operon
DOOR ID:
102108
PPA0156,
PPA0157
View Structure
3
387562-387747
(-)
cobalamin
386500-387526 (-)
PPA0336
Putative permease; FecCD transport family protein
PPA0336
Operon
DOOR ID:
102145
PPA0334,
PPA0335,
PPA0336
View Structure
4
463677-463814
(+)
cobalamin
463845-464601 (+)
PPA0420
Tetrapyrrole methylase; putative precorrin-2 C20-methyltransferase; CbiL (30)
PPA0420
Operon
DOOR ID:
102165
PPA0418,
PPA0419,
PPA2397,
PPA0420,
PPA0421,
PPA0422,
PPA0423,
PPA0424
View Structure
5
470737-470915
(+)
cobalamin
470957-472022 (+)
PPA0425
FecCD-family membrane transport protein
PPA0425
Operon
DOOR ID:
102166
PPA0425,
PPA0426,
PPA0427
View Structure
6
480460-480574
(+)
cobalamin
480616-481231 (+)
PPA0437
Cob(I)alamin adenosyltransferase (7)
PPA0437
Operon
DOOR ID:
102168
PPA0437,
PPA0438,
PPA0439
View Structure
7
485237-485344
(+)
cobalamin
485438-487106 (+)
PPA0441
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (NN:DBI PRT) (1) (N(1)-alpha-phosphoribosyltransferase)
PPA0441
Operon
DOOR ID:
102169
PPA0441,
PPA0442,
PPA0443
View Structure
8
574263-574374
(-)
TPP
571871-572705 (-)
thiG
Thiazole synthase (0)
PPA0519
Operon
DOOR ID:
102187
PPA0518,
PPA0519
(thiG)
View Structure
9
656865-657117
(+)
cobalamin
657196-659107 (+)
PPA0595
Methylmalonyl-CoA mutase small subunit
PPA0595
Operon
DOOR ID:
102203
PPA0595,
PPA0596
View Structure
10
720172-720358
(+)
cobalamin
721408-722443 (+)
PPA0657
Iron transport system; permease protein
PPA0657
Operon
DOOR ID:
102219
PPA0656,
PPA0657,
PPA0658,
PPA0659
View Structure
11
865213-865355
(+)
cobalamin
865731-866931 (+)
PPA0786
Conserved protein
PPA0786
Single gene
DOOR ID:
1610688
PPA0786
View Structure
12
962710-962823
(+)
TPP
963449-964262 (+)
PPA0886
Thiamine-phosphate synthase (TP synthase) (TPS) (Thiamine-phosphate pyrophosphorylase) (TMP pyrophosphorylase) (TMP-PPase)
PPA0886
Operon
DOOR ID:
102265
PPA0885,
PPA0886
View Structure
13
1820348-1820416
(-)
cobalamin
1818442-1819894 (-)
PPA1665
Hypothetical adhesion protein
PPA1665
Operon
DOOR ID:
102427
PPA1665,
PPA1666
View Structure
14
1913653-1913787
(-)
FMN
1912583-1913579 (-)
PPA1752
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
PPA1752
Operon
DOOR ID:
102443
PPA1747
(purH)
,
PPA1748
(purN)
,
PPA1749
(ribH)
,
PPA1750,
PPA1751,
PPA1752
View Structure
15
2066336-2066403
(+)
cobalamin
2066711-2068775 (+)
PPA1906
Hypothetical adhesion protein
PPA1906
Operon
DOOR ID:
102474
PPA1906,
PPA1907
View Structure
16
2154002-2154069
(+)
cobalamin
2154377-2156441 (+)
PPA1983
Hypothetical adhesion protein
PPA1983
Operon
DOOR ID:
102488
PPA1983,
PPA1984,
PPA1985,
PPA1986
View Structure
17
2294565-2294765
(+)
cobalamin
2294876-2297447 (+)
PPA2121
Ribonucleoside-diphosphate reductase
PPA2121
Operon
DOOR ID:
102516
PPA2121,
PPA2122
(nrdF)
View Structure
18
2317475-2317716
(-)
cobalamin
2315056-2317399 (-)
PPA2137
Anaerobic ribonucleoside-triphosphate reductase
PPA2137
Operon
DOOR ID:
102518
PPA2136,
PPA2137
View Structure
Genome:
Propionibacterium acnes KPA171202
(
NC_006085.1
);
Phylum:
Actinobacteria
a:19:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_006085.1";i:2;s:34:"Propionibacterium acnes KPA171202 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"133010-133104";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"134787-135018";i:10;s:1:"+";i:11;s:7:"PPA0111";i:12;s:0:"";i:13;s:7:"PPA0111";i:14;s:6:"Operon";i:15;s:6:"102097";i:16;s:21:"PPA0111;PPA0112(thiE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_006085.1";i:2;s:34:"Propionibacterium acnes KPA171202 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"186523-186626";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"186660-187290";i:10;s:1:"+";i:11;s:7:"PPA0156";i:12;s:49:"Putative ABC-type transporter; permease component";i:13;s:7:"PPA0156";i:14;s:6:"Operon";i:15;s:6:"102108";i:16;s:15:"PPA0156;PPA0157";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_006085.1";i:2;s:34:"Propionibacterium acnes KPA171202 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"387562-387747";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"386500-387526";i:10;s:1:"-";i:11;s:7:"PPA0336";i:12;s:49:"Putative permease; FecCD transport family protein";i:13;s:7:"PPA0336";i:14;s:6:"Operon";i:15;s:6:"102145";i:16;s:23:"PPA0334;PPA0335;PPA0336";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_006085.1";i:2;s:34:"Propionibacterium acnes KPA171202 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"463677-463814";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"463845-464601";i:10;s:1:"+";i:11;s:7:"PPA0420";i:12;s:77:"Tetrapyrrole methylase; putative precorrin-2 C20-methyltransferase; CbiL (30)";i:13;s:7:"PPA0420";i:14;s:6:"Operon";i:15;s:6:"102165";i:16;s:63:"PPA0418;PPA0419;PPA2397;PPA0420;PPA0421;PPA0422;PPA0423;PPA0424";i:17;s:43:"cobalamin biosynthetic process [GO:0009236]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_006085.1";i:2;s:34:"Propionibacterium acnes KPA171202 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"470737-470915";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"470957-472022";i:10;s:1:"+";i:11;s:7:"PPA0425";i:12;s:39:"FecCD-family membrane transport protein";i:13;s:7:"PPA0425";i:14;s:6:"Operon";i:15;s:6:"102166";i:16;s:23:"PPA0425;PPA0426;PPA0427";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_006085.1";i:2;s:34:"Propionibacterium acnes KPA171202 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"480460-480574";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"480616-481231";i:10;s:1:"+";i:11;s:7:"PPA0437";i:12;s:36:"Cob(I)alamin adenosyltransferase (7)";i:13;s:7:"PPA0437";i:14;s:6:"Operon";i:15;s:6:"102168";i:16;s:23:"PPA0437;PPA0438;PPA0439";i:17;s:43:"cobalamin biosynthetic process [GO:0009236]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_006085.1";i:2;s:34:"Propionibacterium acnes KPA171202 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"485237-485344";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"485438-487106";i:10;s:1:"+";i:11;s:7:"PPA0441";i:12;s:126:"Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (NN:DBI PRT) (1) (N(1)-alpha-phosphoribosyltransferase)";i:13;s:7:"PPA0441";i:14;s:6:"Operon";i:15;s:6:"102169";i:16;s:23:"PPA0441;PPA0442;PPA0443";i:17;s:89:"cobalamin biosynthetic process [GO:0009236]; nucleoside biosynthetic process [GO:0009163]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_006085.1";i:2;s:34:"Propionibacterium acnes KPA171202 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"574263-574374";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"571871-572705";i:10;s:1:"-";i:11;s:4:"thiG";i:12;s:21:"Thiazole synthase (0)";i:13;s:7:"PPA0519";i:14;s:6:"Operon";i:15;s:6:"102187";i:16;s:21:"PPA0518;PPA0519(thiG)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_006085.1";i:2;s:34:"Propionibacterium acnes KPA171202 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"656865-657117";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"657196-659107";i:10;s:1:"+";i:11;s:7:"PPA0595";i:12;s:39:"Methylmalonyl-CoA mutase small subunit ";i:13;s:7:"PPA0595";i:14;s:6:"Operon";i:15;s:6:"102203";i:16;s:15:"PPA0595;PPA0596";i:17;s:59:"lactate fermentation to propionate and acetate [GO:0019652]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_006085.1";i:2;s:34:"Propionibacterium acnes KPA171202 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"720172-720358";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"721408-722443";i:10;s:1:"+";i:11;s:7:"PPA0657";i:12;s:39:"Iron transport system; permease protein";i:13;s:7:"PPA0657";i:14;s:6:"Operon";i:15;s:6:"102219";i:16;s:31:"PPA0656;PPA0657;PPA0658;PPA0659";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_006085.1";i:2;s:34:"Propionibacterium acnes KPA171202 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"865213-865355";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"865731-866931";i:10;s:1:"+";i:11;s:7:"PPA0786";i:12;s:17:"Conserved protein";i:13;s:7:"PPA0786";i:14;s:11:"Single gene";i:15;s:7:"1610688";i:16;s:7:"PPA0786";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_006085.1";i:2;s:34:"Propionibacterium acnes KPA171202 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"962710-962823";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"963449-964262";i:10;s:1:"+";i:11;s:7:"PPA0886";i:12;s:123:"Thiamine-phosphate synthase (TP synthase) (TPS) (Thiamine-phosphate pyrophosphorylase) (TMP pyrophosphorylase) (TMP-PPase)";i:13;s:7:"PPA0886";i:14;s:6:"Operon";i:15;s:6:"102265";i:16;s:15:"PPA0885;PPA0886";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_006085.1";i:2;s:34:"Propionibacterium acnes KPA171202 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1820348-1820416";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1818442-1819894";i:10;s:1:"-";i:11;s:7:"PPA1665";i:12;s:29:"Hypothetical adhesion protein";i:13;s:7:"PPA1665";i:14;s:6:"Operon";i:15;s:6:"102427";i:16;s:15:"PPA1665;PPA1666";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_006085.1";i:2;s:34:"Propionibacterium acnes KPA171202 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1913653-1913787";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1912583-1913579";i:10;s:1:"-";i:11;s:7:"PPA1752";i:12;s:140:"Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]";i:13;s:7:"PPA1752";i:14;s:6:"Operon";i:15;s:6:"102443";i:16;s:65:"PPA1747(purH);PPA1748(purN);PPA1749(ribH);PPA1750;PPA1751;PPA1752";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_006085.1";i:2;s:34:"Propionibacterium acnes KPA171202 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2066336-2066403";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2066711-2068775";i:10;s:1:"+";i:11;s:7:"PPA1906";i:12;s:29:"Hypothetical adhesion protein";i:13;s:7:"PPA1906";i:14;s:6:"Operon";i:15;s:6:"102474";i:16;s:15:"PPA1906;PPA1907";i:17;s:26:"cell adhesion [GO:0007155]";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_006085.1";i:2;s:34:"Propionibacterium acnes KPA171202 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2154002-2154069";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2154377-2156441";i:10;s:1:"+";i:11;s:7:"PPA1983";i:12;s:29:"Hypothetical adhesion protein";i:13;s:7:"PPA1983";i:14;s:6:"Operon";i:15;s:6:"102488";i:16;s:31:"PPA1983;PPA1984;PPA1985;PPA1986";i:17;s:26:"cell adhesion [GO:0007155]";i:18;s:15:"View Structure ";}i:17;a:19:{i:0;i:17;i:1;s:11:"NC_006085.1";i:2;s:34:"Propionibacterium acnes KPA171202 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2294565-2294765";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2294876-2297447";i:10;s:1:"+";i:11;s:7:"PPA2121";i:12;s:37:"Ribonucleoside-diphosphate reductase ";i:13;s:7:"PPA2121";i:14;s:6:"Operon";i:15;s:6:"102516";i:16;s:21:"PPA2121;PPA2122(nrdF)";i:17;s:28:"DNA replication [GO:0006260]";i:18;s:15:"View Structure ";}i:18;a:19:{i:0;i:18;i:1;s:11:"NC_006085.1";i:2;s:34:"Propionibacterium acnes KPA171202 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2317475-2317716";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2315056-2317399";i:10;s:1:"-";i:11;s:7:"PPA2137";i:12;s:48:"Anaerobic ribonucleoside-triphosphate reductase ";i:13;s:7:"PPA2137";i:14;s:6:"Operon";i:15;s:6:"102518";i:16;s:15:"PPA2136;PPA2137";i:17;s:28:"DNA replication [GO:0006260]";i:18;s:15:"View Structure ";}}
