Genome: Yersinia pestis biovar Microtus str. 91001 (NC_005810.1); Phylum: Gammaproteobacteria
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 547373-547419 (+)mini-ykkC547917-548274 (-)frdD


DOOR ID: 96041
YP_0512 (frdD),
YP_0513 (frdC),
YP_0514 (frdB),
YP_0515 (frdA)
View Structure
2 1078019-1078165 (-)MOCO1076349-1076832 (-)moaC

Cyclic pyranopterin monophosphate synthase (7) (Molybdenum cofactor biosynthesis protein C)

DOOR ID: 96134
YP_0997 (moaE),
YP_0998 (moaD),
YP_0999 (moaC)
View Structure
3 1200714-1200777 (+)fluoride1200871-1201261 (+)ccrB

Putative fluoride ion transporter CrcB 1
YP_1118Single gene

DOOR ID: 1598711
YP_1118 (ccrB) View Structure
4 1789028-1789227 (+)yybP-ykoY1789237-1789807 (+)YP_1638

Putative manganese efflux pump MntP
YP_1638Single gene

DOOR ID: 1598924
YP_1638 View Structure
5 3027733-3027837 (-)TPP3026808-3027609 (-)thiD

Phosphomethylpyrimidine kinase (Putative phosphomethylpyrimidine kinase)
YP_2725Single gene

DOOR ID: 1599404
YP_2725 (thiD) View Structure
6 3309736-3309925 (+)FMN3310166-3310820 (+)ribB

3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
YP_2973Single gene

DOOR ID: 1599506
YP_2973 (ribB) View Structure
7 3451026-3451151 (+)TPP3451284-3453330 (+)thiC

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)

DOOR ID: 96517
YP_3102 (thiC),
YP_3103 (thiE),
YP_3104 (thiF),
YP_3105 (thiS),
YP_3106 (thiG),
YP_3107 (thiH)
View Structure
8 3497648-3497910 (+)cobalamin3497978-3499874 (+)btuB

Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)

DOOR ID: 96524
YP_3138 (btuB),
YP_3139 (murI)
View Structure
9 4158569-4158706 (+)TPP4158780-4159773 (+)tbpA

Thiamine-binding periplasmic protein

DOOR ID: 96622
YP_3657 (tbpA),
YP_3658 (thiP),
YP_3659 (thiQ)
View Structure