RiboswitchDB

Genome: Bdellovibrio bacteriovorus HD100 (NC_005363.1); Phylum: Oligoflexia

S.No.

Riboswitch Location and Strand

Riboswitch class

Downstream gene location and Strand

Downstream gene name/gene product description

Locus_tag of downstream gene

Single gene/within operon (According to DOOR database)

Operon details (List of genes within operon and their Locus_tag)

Predicted Structure

1

1073868-1073951 (-)

c-di-GMP-I

1072641-1073709 (+)

ilvE

Branched-chain amino acid aminotransferase

single gene

DOOR ID: 1593947

Bd1131 (ilvE)

2

1319702-1319798 (-)

TPP

1317551-1319648 (-)

Bd1392

TonB-dependent siderophore receptor; putative

Single gene

DOOR ID: 1594047

Bd1392

3

2004836-2004933 (-)

purine

2003517-2004291 (+)

Bd2089

Amino acid ABC transporter; periplasmic amino acid-binding

Single gene

DOOR ID: 1594284

Bd2089

4

2412160-2412230 (-)

ykkC-III

2409863-2411669 (-)

MCP

single gene

DOOR ID: 1594433

Bd2504 (MCP)

5

3414605-3414702 (+)

purine

3415576-3416482 (-)

ycjI

Putative carboxypeptidase

Single gene

DOOR ID: 1594756

Bd3508 (ycjI)

a:6:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_005363.1";i:2;s:32:"Bdellovibrio bacteriovorus HD100";i:3;s:11:"Oligoflexia";i:4;s:7:"1553900";i:5;s:15:"1073868-1073951";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"1072641-1073709";i:10;s:1:"+";i:11;s:4:"ilvE";i:12;s:43:"Branched-chain amino acid aminotransferase ";i:13;s:6:"Bd1131";i:14;s:11:"single gene";i:15;s:7:"1593947";i:16;s:12:"Bd1131(ilvE)";i:17;s:56:"branched-chain amino acid metabolic process [GO:0009081]";i:18;s:15:"View Structure
";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_005363.1";i:2;s:32:"Bdellovibrio bacteriovorus HD100";i:3;s:11:"Oligoflexia";i:4;s:7:"1553900";i:5;s:15:"1319702-1319798";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1317551-1319648";i:10;s:1:"-";i:11;s:6:"Bd1392";i:12;s:45:"TonB-dependent siderophore receptor; putative";i:13;s:6:"Bd1392";i:14;s:11:"Single gene";i:15;s:7:"1594047";i:16;s:6:"Bd1392";i:17;s:34:"siderophore transport [GO:0015891]";i:18;s:15:"View Structure
";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_005363.1";i:2;s:32:"Bdellovibrio bacteriovorus HD100";i:3;s:11:"Oligoflexia";i:4;s:7:"1553900";i:5;s:15:"2004836-2004933";i:6;s:1:"-";i:7;s:6:"purine";i:8;s:0:"";i:9;s:15:"2003517-2004291";i:10;s:1:"+";i:11;s:6:"Bd2089";i:12;s:58:"Amino acid ABC transporter; periplasmic amino acid-binding";i:13;s:6:"Bd2089";i:14;s:11:"Single gene";i:15;s:7:"1594284";i:16;s:6:"Bd2089";i:17;s:0:"";i:18;s:15:"View Structure
";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_005363.1";i:2;s:32:"Bdellovibrio bacteriovorus HD100";i:3;s:11:"Oligoflexia";i:4;s:7:"1553900";i:5;s:15:"2412160-2412230";i:6;s:1:"-";i:7;s:8:"ykkC-III";i:8;s:0:"";i:9;s:15:"2409863-2411669";i:10;s:1:"-";i:11;s:3:"MCP";i:12;s:0:"";i:13;s:6:"Bd2504";i:14;s:11:"single gene";i:15;s:7:"1594433";i:16;s:11:"Bd2504(MCP)";i:17;s:0:"";i:18;s:15:"View Structure
";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_005363.1";i:2;s:32:"Bdellovibrio bacteriovorus HD100";i:3;s:11:"Oligoflexia";i:4;s:7:"1553900";i:5;s:15:"3414605-3414702";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:15:"3415576-3416482";i:10;s:1:"-";i:11;s:4:"ycjI";i:12;s:25:"Putative carboxypeptidase";i:13;s:6:"Bd3508";i:14;s:11:"Single gene";i:15;s:7:"1594756";i:16;s:12:"Bd3508(ycjI)";i:17;s:0:"";i:18;s:15:"View Structure
";}}