Genome: Rhodopseudomonas palustris CGA009 (NC_005296.1); Phylum: Alphaproteobacteria
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 33607-33689 (-)ZMP-ZTP31988-33581 (-)purH

Bifunctional purine biosynthesis protein PurH [Includes: Phosphoribosylaminoimidazolecarboxamide formyltransferase (0) (ATIC) (IMP synthase) (Inosinicase)]		RPA0028Single gene

DOOR ID: 1590425		RPA0028 (purH) View Structure
2 449694-449890 (-)cobalamin447308-449585 (-)RPA0407

Possible TonB-dependent receptor (Outer membrane siderophore receptor)		RPA0407Operon

DOOR ID: 92235		RPA0406,
RPA0407		 View Structure
3 784348-784546 (+)cobalamin784565-785087 (+)RPA0713

RPA0713Operon

DOOR ID: 92293		RPA0713,
RPA0714 (cobU),
RPA0715 (cobW)		 View Structure
4 798524-798739 (-)cobalamin797392-798451 (-)nxiA

Nickel/cobalt efflux system		RPA0724Operon

DOOR ID: 92296		RPA0722 (fecE),
RPA0723,
RPA0724 (nxiA)		 View Structure
5 970036-970214 (+)SAH971471-972509 (+)hemH

Ferrochelatase (Heme synthase) (Protoheme ferro-lyase)		RPA0875Single gene

DOOR ID: 1590811		RPA0875 (hemH) View Structure
6 1097952-1098152 (+)cobalamin1098341-1098677 (+)RPA0994

RPA0994Single gene

DOOR ID: 1590872		RPA0994 View Structure
7 1558545-1558593 (-)mini-ykkC1557681-1558521 (-)RPA1407

RPA1407Operon

DOOR ID: 92420		RPA1404,
RPA1405,
RPA1406,
RPA1407,
RPA1408,
RPA1409,
RPA1410		 View Structure
8 1561347-1561451 (-)ykkC-yxkD1560200-1561271 (-)RPA1410

Possible taurine transport system protein		RPA1410Operon

DOOR ID: 92420		RPA1404,
RPA1405,
RPA1406,
RPA1407,
RPA1408,
RPA1409,
RPA1410		 View Structure
9 2339917-2340118 (+)cobalamin2340150-2341086 (+)RPA2081

Possible Fe ABC Transporter		RPA2081Single gene

DOOR ID: 1591351		RPA2081 View Structure
10 2349135-2349339 (-)cobalamin2348461-2349025 (-)RPA2091

RPA2091Operon

DOOR ID: 92550		RPA2088 (cobJ),
RPA2089 (cobI),
RPA2090 (cobH),
RPA2091		 View Structure
11 2352000-2352211 (+)cobalamin2352418-2353483 (+)cobT1

Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (NN:DBI PRT) (1) (N(1)-alpha-phosphoribosyltransferase)		RPA2094Operon

DOOR ID: 92552		RPA2094 (cobT1),
RPA2095,
RPA2096 (cobQ2),
RPA2097 (cobF)		 View Structure
12 2586444-2586487 (-)mini-ykkC2586041-2586356 (-)RPA2284

RPA2284Single gene

DOOR ID: 1591448		RPA2284 View Structure
13 2715829-2716025 (+)cobalamin2716132-2718499 (+)metE

5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)		RPA2397Single gene

DOOR ID: 1591480		RPA2397 (metE) View Structure
14 4039380-4039518 (+)TPP4039634-4040612 (+)thiO

Thiamine biosynthesis oxidoreductase thiO		RPA3573Operon

DOOR ID: 92837		RPA3573 (thiO),
RPA3574 (thiS)		 View Structure
15 4348220-4348310 (+)glycine4348443-4349592 (+)gcvT

Glycine cleavage system protein T2 (0)		RPA3848Single gene

DOOR ID: 1592133		RPA3848 (gcvT) View Structure
16 5009586-5009665 (-)sam-alpha5008279-5009482 (-)metX

Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)		RPA4437Operon

DOOR ID: 92993		RPA4436,
RPA4437 (metX)		 View Structure
17 5380769-5380848 (+)sam-alpha5380922-5382134 (+)metZ

O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase) 		RPA4766Single gene

DOOR ID: 1592599		RPA4766 (metZ) View Structure
18 5422528-5422731 (+)cobalamin5422838-5424950 (+)RPA4803

Putative outer membrane hemin/siderophore receptor protein		RPA4803Single gene

DOOR ID: 1592612		RPA4803 View Structure