RiboswitchDB

Genome: Vibrio vulnificus YJ016 chromosome II (NC_005140.1); Phylum: Gammaproteobacteria

S.No.

Riboswitch Location and Strand

Riboswitch class

Downstream gene location and Strand

Downstream gene name/gene product description

Locus_tag of downstream gene

Single gene/within operon (According to DOOR database)

Operon details (List of genes within operon and their Locus_tag)

Predicted Structure

1

298374-298514 (-)

FMN

297620-298277 (-)

ribB

3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)

Single gene

DOOR ID: 1588724

VVA0260 (ribB)

2

303597-303695 (-)

TPP

302668-303508 (-)

VVA0267

Phosphomethylpyrimidine kinase

Single gene

DOOR ID: 1588731

VVA0267

3

624493-624584 (-)

c-di-GMP-I

622896-624354 (-)

VVA0551

GlcNAc-binding protein A

single gene

DOOR ID: 1588878

VVA0551

4

1130553-1130652 (+)

purine

1130675-1131671 (+)

VVA1020

Adenosine deaminase (Adenosine aminohydrolase)

Single gene

DOOR ID: 1589084

VVA1020

5

1183685-1183793 (-)

yybP-ykoY

1182515-1183484 (-)

VVA1055

Single gene

DOOR ID: 1589090

VVA1055

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";}}