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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
527020-527145
(-)
TPP
524963-526912 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
plu0486
Operon
DOOR ID:
90006
plu0481
(thiH)
,
plu0482
(thiG)
,
plu0483
(thiS)
,
plu0484
(thiF)
,
plu0485
(thiE)
,
plu0486
(thiC)
View Structure
2
705692-705796
(-)
TPP
704605-705630 (-)
tbpA
Thiamine-binding periplasmic protein
plu0619
Operon
DOOR ID:
90036
plu0617
(thiQ)
,
plu0618
(thiP)
,
plu0619
(tbpA)
View Structure
3
1797531-1797675
(+)
MOCO
1798673-1799164 (+)
moaC
Cyclic pyranopterin monophosphate synthase (7) (Molybdenum cofactor biosynthesis protein C)
plu1500
Operon
DOOR ID:
90198
plu1499
(moaA)
,
plu1500
(moaC)
,
plu1501
(moaD)
,
plu1502
(moaE)
View Structure
4
3500618-3500805
(-)
cobalamin
3499134-3500517 (-)
cbiA
Cobyrinate a;c-diamide synthase (1) (Cobyrinic acid a;c-diamide synthetase)
plu2999
Operon
DOOR ID:
90459
plu2988
(cbiL)
,
plu2989
(cbiK)
,
plu2990
(cbiJ)
,
plu2991
(cbiH)
,
plu2992
(cbiG)
,
plu2993
(cbiF)
,
plu2994
(cbiT)
,
plu2995
(cbiE)
,
plu2996
(cbiD)
,
plu2997
(cbiC)
,
plu2998
(cobD)
,
plu2999
(cbiA)
View Structure
5
4406312-4406483
(-)
ykoK
4405166-4406253 (-)
plu3736
plu3736
Single gene
DOOR ID:
1586721
plu3736
View Structure
6
4649435-4649612
(-)
FMN
4648547-4649305 (-)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
plu3963
Single gene
DOOR ID:
1586808
plu3963
(ribB)
View Structure
7
4818247-4818293
(-)
mini-ykkC
4817908-4818223 (-)
sugE
plu4129
Single gene
DOOR ID:
1586875
plu4129
(sugE)
View Structure
Genome:
Photorhabdus luminescens subsp. laumondii TTO1
(
NC_005126.1
);
Phylum:
Gammaproteobacteria
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