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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
243048-243195
(+)
TPP
243271-245170 (+)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
CV_0235
Single gene
DOOR ID:
1581179
CV_0235
(thiC)
View Structure
2
522458-522723
(+)
cobalamin
522847-524695 (+)
CV_0494
Probable outer membrane receptor protein
CV_0494
Operon
DOOR ID:
87781
CV_0494,
CV_0495
(cobU)
,
CV_0496,
CV_0497,
CV_0498
View Structure
3
998457-998548
(+)
SAH
998620-1000021 (+)
ahcY
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
CV_0965
Single gene
DOOR ID:
1581464
CV_0965
(ahcY)
View Structure
4
1431559-1431734
(-)
yybP-ykoY
1429132-1430932 (+)
CV_1358
Probable methyl-accepting chemotaxis protein IV
CV_1358
Single gene
DOOR ID:
1581660
CV_1358
View Structure
5
1690517-1690702
(-)
cobalamin
1689362-1690499 (-)
hoxN
Nickel/cobalt efflux system
CV_1573
Operon
DOOR ID:
87987
CV_1569
(cobA1)
,
CV_1570,
CV_1571
(cobN)
,
CV_1572,
CV_1573
(hoxN)
View Structure
6
2193399-2193497
(-)
glycine
2192638-2193253 (-)
CV_2012
CV_2012
Single gene
DOOR ID:
1581968
CV_2012
View Structure
7
2193502-2193587
(-)
glycine
2192638-2193253 (-)
CV_2012
CV_2012
Single gene
DOOR ID:
1581968
CV_2012
View Structure
8
2613254-2613318
(-)
fluoride
2611859-2613176 (-)
CV_2429
Probable chloride channel protein EriC
CV_2429
Single gene
DOOR ID:
1582114
CV_2429
View Structure
9
2627795-2627957
(-)
yybP-ykoY
2626750-2627749 (-)
CV_2442
Probable cation antiporter
CV_2442
Single gene
DOOR ID:
1582119
CV_2442
View Structure
10
2652058-2652143
(-)
SAH
2651413-2651575 (-)
CV_2464
CV_2464
Single gene
DOOR ID:
1582132
CV_2464
View Structure
11
3448389-3448483
(-)
TPP
3447321-3448338 (-)
tbpA
Thiamin-binding periplasmic protein
CV_3164
Operon
DOOR ID:
88280
CV_3161,
CV_3162,
CV_3163,
CV_3164
(tbpA)
View Structure
12
3525127-3525291
(+)
ykoK
3525368-3526394 (+)
mgtE
Magnesium transporter
CV_3245
Single gene
DOOR ID:
1582456
CV_3245
(mgtE)
View Structure
13
3728158-3728256
(-)
glycine
3727028-3728117 (-)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
CV_3431
Operon
DOOR ID:
88331
CV_3430
(gcvH)
,
CV_3431
(gcvT)
View Structure
14
3728271-3728361
(-)
glycine
3727028-3728117 (-)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
CV_3431
Operon
DOOR ID:
88331
CV_3430
(gcvH)
,
CV_3431
(gcvT)
View Structure
15
4397327-4397429
(+)
ykkC-yxkD
4397962-4398796 (-)
apaH
Bis(5'-nucleosyl)-tetraphosphatase; symmetrical (1) (Ap4A hydrolase) (Diadenosine 5';5'''-P1;P4-tetraphosphate pyrophosphohydrolase) (Diadenosine tetraphosphatase)
CV_4067
Single gene
DOOR ID:
1582769
CV_4067
(apaH)
View Structure
16
4551002-4551150
(+)
FMN
4551281-4551914 (+)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
CV_4216
Operon
DOOR ID:
88496
CV_4216
(ribB)
,
CV_4217,
CV_4218,
CV_4219,
CV_4220
View Structure
Genome:
Chromobacterium violaceum ATCC 12472
(
NC_005085.1
);
Phylum:
Betaproteobacteria
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gene";i:15;s:7:"1581179";i:16;s:13:"CV_0235(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_005085.1";i:2;s:37:"Chromobacterium violaceum ATCC 12472 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"522458-522723";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"522847-524695";i:10;s:1:"+";i:11;s:7:"CV_0494";i:12;s:40:"Probable outer membrane receptor protein";i:13;s:7:"CV_0494";i:14;s:6:"Operon";i:15;s:5:"87781";i:16;s:45:"CV_0494;CV_0495(cobU);CV_0496;CV_0497;CV_0498";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_005085.1";i:2;s:37:"Chromobacterium violaceum ATCC 12472 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"998457-998548";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:14:"998620-1000021";i:10;s:1:"+";i:11;s:4:"ahcY";i:12;s:73:"Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)";i:13;s:7:"CV_0965";i:14;s:11:"Single gene";i:15;s:7:"1581464";i:16;s:13:"CV_0965(ahcY)";i:17;s:96:"one-carbon metabolic process [GO:0006730]; S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_005085.1";i:2;s:37:"Chromobacterium violaceum ATCC 12472 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1431559-1431734";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1429132-1430932";i:10;s:1:"+";i:11;s:7:"CV_1358";i:12;s:47:"Probable methyl-accepting chemotaxis protein IV";i:13;s:7:"CV_1358";i:14;s:11:"Single gene";i:15;s:7:"1581660";i:16;s:7:"CV_1358";i:17;s:23:"chemotaxis [GO:0006935]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_005085.1";i:2;s:37:"Chromobacterium violaceum ATCC 12472 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1690517-1690702";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1689362-1690499";i:10;s:1:"-";i:11;s:4:"hoxN";i:12;s:27:"Nickel/cobalt efflux system";i:13;s:7:"CV_1573";i:14;s:6:"Operon";i:15;s:5:"87987";i:16;s:58:"CV_1569(cobA1);CV_1570;CV_1571(cobN);CV_1572;CV_1573(hoxN)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_005085.1";i:2;s:37:"Chromobacterium violaceum ATCC 12472 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2193399-2193497";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"2192638-2193253";i:10;s:1:"-";i:11;s:7:"CV_2012";i:12;s:0:"";i:13;s:7:"CV_2012";i:14;s:11:"Single gene";i:15;s:7:"1581968";i:16;s:7:"CV_2012";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_005085.1";i:2;s:37:"Chromobacterium violaceum ATCC 12472 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2193502-2193587";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"2192638-2193253";i:10;s:1:"-";i:11;s:7:"CV_2012";i:12;s:0:"";i:13;s:7:"CV_2012";i:14;s:11:"Single gene";i:15;s:7:"1581968";i:16;s:7:"CV_2012";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_005085.1";i:2;s:37:"Chromobacterium violaceum ATCC 12472 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2613254-2613318";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"2611859-2613176";i:10;s:1:"-";i:11;s:7:"CV_2429";i:12;s:38:"Probable chloride channel protein EriC";i:13;s:7:"CV_2429";i:14;s:11:"Single gene";i:15;s:7:"1582114";i:16;s:7:"CV_2429";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_005085.1";i:2;s:37:"Chromobacterium violaceum ATCC 12472 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2627795-2627957";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"2626750-2627749";i:10;s:1:"-";i:11;s:7:"CV_2442";i:12;s:26:"Probable cation antiporter";i:13;s:7:"CV_2442";i:14;s:11:"Single gene";i:15;s:7:"1582119";i:16;s:7:"CV_2442";i:17;s:36:"transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_005085.1";i:2;s:37:"Chromobacterium violaceum ATCC 12472 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2652058-2652143";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"2651413-2651575";i:10;s:1:"-";i:11;s:7:"CV_2464";i:12;s:0:"";i:13;s:7:"CV_2464";i:14;s:11:"Single gene";i:15;s:7:"1582132";i:16;s:7:"CV_2464";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_005085.1";i:2;s:37:"Chromobacterium violaceum ATCC 12472 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3448389-3448483";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3447321-3448338";i:10;s:1:"-";i:11;s:4:"tbpA";i:12;s:35:"Thiamin-binding periplasmic protein";i:13;s:7:"CV_3164";i:14;s:6:"Operon";i:15;s:5:"88280";i:16;s:37:"CV_3161;CV_3162;CV_3163;CV_3164(tbpA)";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_005085.1";i:2;s:37:"Chromobacterium violaceum ATCC 12472 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3525127-3525291";i:6;s:1:"+";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"3525368-3526394";i:10;s:1:"+";i:11;s:4:"mgtE";i:12;s:21:"Magnesium transporter";i:13;s:7:"CV_3245";i:14;s:11:"Single gene";i:15;s:7:"1582456";i:16;s:13:"CV_3245(mgtE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_005085.1";i:2;s:37:"Chromobacterium violaceum ATCC 12472 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3728158-3728256";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"3727028-3728117";i:10;s:1:"-";i:11;s:4:"gcvT";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:7:"CV_3431";i:14;s:6:"Operon";i:15;s:5:"88331";i:16;s:27:"CV_3430(gcvH);CV_3431(gcvT)";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_005085.1";i:2;s:37:"Chromobacterium violaceum ATCC 12472 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3728271-3728361";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"3727028-3728117";i:10;s:1:"-";i:11;s:4:"gcvT";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:7:"CV_3431";i:14;s:6:"Operon";i:15;s:5:"88331";i:16;s:27:"CV_3430(gcvH);CV_3431(gcvT)";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_005085.1";i:2;s:37:"Chromobacterium violaceum ATCC 12472 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"4397327-4397429";i:6;s:1:"+";i:7;s:9:"ykkC-yxkD";i:8;s:0:"";i:9;s:15:"4397962-4398796";i:10;s:1:"-";i:11;s:4:"apaH";i:12;s:163:"Bis(5'-nucleosyl)-tetraphosphatase; symmetrical (1) (Ap4A hydrolase) (Diadenosine 5';5'''-P1;P4-tetraphosphate pyrophosphohydrolase) (Diadenosine tetraphosphatase)";i:13;s:7:"CV_4067";i:14;s:11:"Single gene";i:15;s:7:"1582769";i:16;s:13:"CV_4067(apaH)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_005085.1";i:2;s:37:"Chromobacterium violaceum ATCC 12472 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"4551002-4551150";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"4551281-4551914";i:10;s:1:"+";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:7:"CV_4216";i:14;s:6:"Operon";i:15;s:5:"88496";i:16;s:45:"CV_4216(ribB);CV_4217;CV_4218;CV_4219;CV_4220";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}}