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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
224618-224792
(-)
lysine
222839-224423 (-)
EF0247
EF0247
Operon
DOOR ID:
81646
EF0246,
EF0247
View Structure
2
743416-743511
(+)
SMK_box
744865-746332 (+)
EF0785
EF0785
Operon
DOOR ID:
81749
EF0785,
EF0786
View Structure
3
903574-903741
(+)
THF
903780-904320 (+)
EF0940
EF0940
Single gene
DOOR ID:
1562661
EF0940
View Structure
4
1024697-1024864
(-)
ykoK
1024266-1024350 (+)
tRNA-Leu-3
tRNA-Leu-3
Single gene
DOOR ID:
1723099
tRNA-Leu-3
View Structure
5
1027612-1027779
(-)
ykoK
1025794-1027552 (-)
EF1054
EF1054
Operon
DOOR ID:
81802
EF1053,
EF1054
View Structure
6
1268265-1268435
(+)
ykoK
1268548-1271209 (+)
EF1304
EF1304
Single gene
DOOR ID:
1562775
EF1304
View Structure
7
1323290-1323457
(+)
ykoK
1323564-1323657 (+)
EF1351
EF1351
Operon
DOOR ID:
81864
EF1351,
EF1352
View Structure
8
1495313-1495432
(+)
FMN
1495563-1496169 (+)
EF1541
EF1541
Single gene
DOOR ID:
1562841
EF1541
View Structure
9
1591091-1591222
(-)
cobalamin
1589635-1590766 (-)
EF1635
EF1635
Single gene
DOOR ID:
1562876
EF1635
View Structure
10
1595326-1595497
(-)
cobalamin
1594179-1595139 (-)
EF1641
EF1641
Operon
DOOR ID:
81914
EF1639,
EF1640,
EF1641
View Structure
11
2055313-2055460
(-)
glmS
2053426-2055235 (-)
glmS
EF2151
Single gene
DOOR ID:
1563024
EF2151
(glmS)
View Structure
12
2288329-2288426
(-)
purine
2287592-2288174 (-)
xpt
EF2365
Operon
DOOR ID:
82066
EF2364,
EF2365
(xpt)
View Structure
13
2384445-2384514
(-)
fluoride
2383102-2384368 (-)
EF2463
EF2463
Single gene
DOOR ID:
1563114
EF2463
View Structure
14
2504809-2504853
(+)
PreQ1
2504930-2505905 (+)
EF2587
EF2587
Operon
DOOR ID:
82114
EF2587,
EF2588
View Structure
15
2571344-2571389
(-)
PreQ1
2570824-2571331 (-)
EF2659
EF2659
Single gene
DOOR ID:
1563157
EF2659
View Structure
16
2676258-2676348
(-)
TPP
2675589-2676153 (-)
EF2770
EF2770
Operon
DOOR ID:
82164
EF2767,
EF2768,
EF2769,
EF2770
View Structure
17
2683563-2683651
(-)
TPP
2682933-2683464 (-)
EF2778
EF2778
Operon
DOOR ID:
82165
EF2775
(thiD)
,
EF2776
(thiE)
,
EF2777,
EF2778
View Structure
18
3116366-3116532
(+)
ykoK
3116623-3118240 (+)
EF3245
EF3245
Operon
DOOR ID:
82251
EF3244,
EF3245
View Structure
Genome:
Enterococcus faecalis V583
(
NC_004668.1
);
Phylum:
Firmicutes
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";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"3116366-3116532";i:6;s:1:"+";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"3116623-3118240";i:10;s:1:"+";i:11;s:6:"EF3245";i:12;s:0:"";i:13;s:6:"EF3245";i:14;s:6:"Operon";i:15;s:5:"82251";i:16;s:13:"EF3244;EF3245";i:17;s:0:"";i:18;s:15:"View Structure ";}}
