RiboswitchDB

Genome: Streptococcus pyogenes SSI-1 (NC_004606.1); Phylum: Firmicutes

S.No.

Riboswitch Location and Strand

Riboswitch class

Downstream gene location and Strand

Downstream gene name/gene product description

Locus_tag of downstream gene

Single gene/within operon (According to DOOR database)

Operon details (List of genes within operon and their Locus_tag)

Predicted Structure

1

977077-977172 (+)

purine

977258-977840 (+)

SPs0993

Xanthine phosphoribosyltransferase (XPRTase) (2)

Operon

DOOR ID: 79522

SPs0993,
SPs0994

2

1088865-1088951 (+)

glycine

1089078-1090401 (+)

SPs1102

Single gene

DOOR ID: 1558625

SPs1102

3

1355296-1355411 (-)

preQ1-II

1352644-1354603 (-)

ligA

DNA ligase (Polydeoxyribonucleotide synthase [NAD(+)])

Operon

DOOR ID: 79607

SPs1362,
SPs1363 (ligA)

4

1431750-1431846 (+)

TPP

1431890-1432454 (+)

SPs1431

Single gene

DOOR ID: 1558726

SPs1431

5

1586954-1587078 (-)

FMN

1586311-1586818 (-)

SPs1587

Operon

DOOR ID: 79656

SPs1586,
SPs1587

a:6:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_004606.1";i:2;s:29:"Streptococcus pyogenes SSI-1 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"977077-977172";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"977258-977840";i:10;s:1:"+";i:11;s:7:"SPs0993";i:12;s:48:"Xanthine phosphoribosyltransferase (XPRTase) (2)";i:13;s:7:"SPs0993";i:14;s:6:"Operon";i:15;s:5:"79522";i:16;s:15:"SPs0993;SPs0994";i:17;s:109:"purine ribonucleoside salvage [GO:0006166]; xanthine metabolic process [GO:0046110]; XMP salvage [GO:0032265]";i:18;s:15:"View Structure
";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_004606.1";i:2;s:29:"Streptococcus pyogenes SSI-1 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1088865-1088951";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1089078-1090401";i:10;s:1:"+";i:11;s:7:"SPs1102";i:12;s:0:"";i:13;s:7:"SPs1102";i:14;s:11:"Single gene";i:15;s:7:"1558625";i:16;s:7:"SPs1102";i:17;s:0:"";i:18;s:15:"View Structure
";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_004606.1";i:2;s:29:"Streptococcus pyogenes SSI-1 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1355296-1355411";i:6;s:1:"-";i:7;s:8:"preQ1-II";i:8;s:0:"";i:9;s:15:"1352644-1354603";i:10;s:1:"-";i:11;s:4:"ligA";i:12;s:55:"DNA ligase  (Polydeoxyribonucleotide synthase [NAD(+)])";i:13;s:7:"SPs1363";i:14;s:6:"Operon";i:15;s:5:"79607";i:16;s:21:"SPs1362;SPs1363(ligA)";i:17;s:53:"DNA repair [GO:0006281]; DNA replication [GO:0006260]";i:18;s:15:"View Structure
";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_004606.1";i:2;s:29:"Streptococcus pyogenes SSI-1 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1431750-1431846";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1431890-1432454";i:10;s:1:"+";i:11;s:7:"SPs1431";i:12;s:0:"";i:13;s:7:"SPs1431";i:14;s:11:"Single gene";i:15;s:7:"1558726";i:16;s:7:"SPs1431";i:17;s:0:"";i:18;s:15:"View Structure
";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_004606.1";i:2;s:29:"Streptococcus pyogenes SSI-1 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1586954-1587078";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1586311-1586818";i:10;s:1:"-";i:11;s:7:"SPs1587";i:12;s:0:"";i:13;s:7:"SPs1587";i:14;s:6:"Operon";i:15;s:5:"79656";i:16;s:15:"SPs1586;SPs1587";i:17;s:0:"";i:18;s:15:"View Structure
";}}