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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
273555-273692
(-)
TPP
271445-273440 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
ECA0232
Operon
DOOR ID:
75541
ECA0228
(thiH)
,
ECA0229
(thiG)
,
ECA0229A
(thiS)
,
ECA0230
(thiF)
,
ECA0231
(thiE)
,
ECA0232
(thiC)
View Structure
2
1001970-1002170
(+)
FMN
1002297-1002951 (+)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
ECA0899
Single gene
DOOR ID:
1545296
ECA0899
(ribB)
View Structure
3
1468853-1468958
(-)
fluoride
1468398-1468782 (-)
crcB
Putative fluoride ion transporter CrcB
ECA1295
Single gene
DOOR ID:
1545446
ECA1295
(crcB)
View Structure
4
2166770-2166871
(+)
ykkC-yxkD
2166930-2167989 (+)
ECA1912
Putative ABC transporter; periplasmic protein
ECA1912
Operon
DOOR ID:
75862
ECA1912,
ECA1913,
ECA1914,
ECA1915,
ECA1916
View Structure
5
2171199-2171246
(+)
mini-ykkC
2171265-2174868 (+)
ECA1917
ECA1917
Single gene
DOOR ID:
1545712
ECA1917
View Structure
6
2645034-2645129
(-)
glycine
2644385-2645012 (-)
ECA2334
Putative membrane protein
ECA2334
Single gene
DOOR ID:
1545905
ECA2334
View Structure
7
2700834-2701037
(+)
yybP-ykoY
2701065-2701629 (+)
ECA2389
Putative manganese efflux pump MntP
ECA2389
Single gene
DOOR ID:
1545940
ECA2389
View Structure
8
3157412-3157560
(-)
MOCO
3155881-3156400 (-)
moaB
Molybdenum cofactor biosynthesis protein B
ECA2816
Operon
DOOR ID:
76025
ECA2813
(moaE)
,
ECA2814
(moaD)
,
ECA2815
(moaC)
,
ECA2816
(moaB)
,
ECA2817
(moaA)
View Structure
9
3578397-3578493
(-)
TPP
3577566-3578361 (-)
thiM
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
ECA3197
Operon
DOOR ID:
76097
ECA3196
(thiD)
,
ECA3197
(thiM)
View Structure
10
4296609-4296705
(+)
TPP
4296785-4297769 (+)
tbpA
Thiamine-binding periplasmic protein
ECA3844
Operon
DOOR ID:
76229
ECA3844
(tbpA)
,
ECA3845
(thiP)
,
ECA3846
(thiQ)
View Structure
11
4451556-4451748
(+)
lysine
4451862-4453239 (+)
lysC
Aspartokinase
ECA3981
Single gene
DOOR ID:
1546597
ECA3981
(lysC)
View Structure
12
4750066-4750367
(-)
cobalamin
4748152-4750000 (-)
btuB
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
ECA4238
Operon
DOOR ID:
76304
ECA4237
(murI)
,
ECA4238
(btuB)
View Structure
Genome:
Pectobacterium atrosepticum SCRI1043
(
NC_004547.2
);
Phylum:
Gammaproteobacteria
a:13:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_004547.2";i:2;s:37:"Pectobacterium atrosepticum SCRI1043 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"273555-273692";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"271445-273440";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:7:"ECA0232";i:14;s:6:"Operon";i:15;s:5:"75541";i:16;s:84:"ECA0228(thiH);ECA0229(thiG);ECA0229A(thiS);ECA0230(thiF);ECA0231(thiE);ECA0232(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_004547.2";i:2;s:37:"Pectobacterium atrosepticum SCRI1043 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1001970-1002170";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1002297-1002951";i:10;s:1:"+";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:7:"ECA0899";i:14;s:11:"Single gene";i:15;s:7:"1545296";i:16;s:13:"ECA0899(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_004547.2";i:2;s:37:"Pectobacterium atrosepticum SCRI1043 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1468853-1468958";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"1468398-1468782";i:10;s:1:"-";i:11;s:4:"crcB";i:12;s:38:"Putative fluoride ion transporter CrcB";i:13;s:7:"ECA1295";i:14;s:11:"Single gene";i:15;s:7:"1545446";i:16;s:13:"ECA1295(crcB)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_004547.2";i:2;s:37:"Pectobacterium atrosepticum SCRI1043 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2166770-2166871";i:6;s:1:"+";i:7;s:9:"ykkC-yxkD";i:8;s:0:"";i:9;s:15:"2166930-2167989";i:10;s:1:"+";i:11;s:7:"ECA1912";i:12;s:45:"Putative ABC transporter; periplasmic protein";i:13;s:7:"ECA1912";i:14;s:6:"Operon";i:15;s:5:"75862";i:16;s:39:"ECA1912;ECA1913;ECA1914;ECA1915;ECA1916";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_004547.2";i:2;s:37:"Pectobacterium atrosepticum SCRI1043 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2171199-2171246";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"2171265-2174868";i:10;s:1:"+";i:11;s:7:"ECA1917";i:12;s:0:"";i:13;s:7:"ECA1917";i:14;s:11:"Single gene";i:15;s:7:"1545712";i:16;s:7:"ECA1917";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_004547.2";i:2;s:37:"Pectobacterium atrosepticum SCRI1043 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2645034-2645129";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"2644385-2645012";i:10;s:1:"-";i:11;s:7:"ECA2334";i:12;s:25:"Putative membrane protein";i:13;s:7:"ECA2334";i:14;s:11:"Single gene";i:15;s:7:"1545905";i:16;s:7:"ECA2334";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_004547.2";i:2;s:37:"Pectobacterium atrosepticum SCRI1043 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2700834-2701037";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"2701065-2701629";i:10;s:1:"+";i:11;s:7:"ECA2389";i:12;s:35:"Putative manganese efflux pump MntP";i:13;s:7:"ECA2389";i:14;s:11:"Single gene";i:15;s:7:"1545940";i:16;s:7:"ECA2389";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_004547.2";i:2;s:37:"Pectobacterium atrosepticum SCRI1043 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3157412-3157560";i:6;s:1:"-";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"3155881-3156400";i:10;s:1:"-";i:11;s:4:"moaB";i:12;s:42:"Molybdenum cofactor biosynthesis protein B";i:13;s:7:"ECA2816";i:14;s:6:"Operon";i:15;s:5:"76025";i:16;s:69:"ECA2813(moaE);ECA2814(moaD);ECA2815(moaC);ECA2816(moaB);ECA2817(moaA)";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_004547.2";i:2;s:37:"Pectobacterium atrosepticum SCRI1043 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3578397-3578493";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3577566-3578361";i:10;s:1:"-";i:11;s:4:"thiM";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:7:"ECA3197";i:14;s:6:"Operon";i:15;s:5:"76097";i:16;s:27:"ECA3196(thiD);ECA3197(thiM)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_004547.2";i:2;s:37:"Pectobacterium atrosepticum SCRI1043 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4296609-4296705";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4296785-4297769";i:10;s:1:"+";i:11;s:4:"tbpA";i:12;s:36:"Thiamine-binding periplasmic protein";i:13;s:7:"ECA3844";i:14;s:6:"Operon";i:15;s:5:"76229";i:16;s:41:"ECA3844(tbpA);ECA3845(thiP);ECA3846(thiQ)";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_004547.2";i:2;s:37:"Pectobacterium atrosepticum SCRI1043 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4451556-4451748";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"4451862-4453239";i:10;s:1:"+";i:11;s:4:"lysC";i:12;s:14:"Aspartokinase ";i:13;s:7:"ECA3981";i:14;s:11:"Single gene";i:15;s:7:"1546597";i:16;s:13:"ECA3981(lysC)";i:17;s:105:"lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_004547.2";i:2;s:37:"Pectobacterium atrosepticum SCRI1043 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4750066-4750367";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4748152-4750000";i:10;s:1:"-";i:11;s:4:"btuB";i:12;s:89:"Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)";i:13;s:7:"ECA4238";i:14;s:6:"Operon";i:15;s:5:"76304";i:16;s:27:"ECA4237(murI);ECA4238(btuB)";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}}
