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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
625249-625331
(+)
ZMP-ZTP
625356-626949 (+)
purH
Bifunctional purine biosynthesis protein PurH [Includes: Phosphoribosylaminoimidazolecarboxamide formyltransferase (0) (ATIC) (IMP synthase) (Inosinicase)]
blr0581
Single gene
DOOR ID:
1536958
blr0581
(purH)
View Structure
2
1219699-1219778
(-)
sam-alpha
1218435-1219689 (-)
metZ
bll1105
Single gene
DOOR ID:
1537480
bll1105
(metZ)
View Structure
3
1515209-1515288
(+)
sam-alpha
1515379-1516582 (+)
metX
Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)
blr1399
Single gene
DOOR ID:
1537774
blr1399
(metX)
View Structure
4
2232793-2232995
(+)
cobalamin
2233095-2235441 (+)
blr2068
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)
blr2068
Single gene
DOOR ID:
1538441
blr2068
View Structure
5
2568283-2568373
(-)
SAH
2565881-2568116 (-)
bll2362
Succinoglycan biosynthesis transport protein
bll2362
Single gene
DOOR ID:
1538734
bll2362
View Structure
6
2887315-2887392
(-)
fluoride
2885976-2887185 (-)
bll2640
Major facilitator superfamily transporter
bll2640
Single gene
DOOR ID:
1539012
bll2640
View Structure
7
3617290-3617510
(+)
cobalamin
3617604-3617979 (+)
blr3262
Blr3262 protein
blr3262
Single gene
DOOR ID:
1539630
blr3262
View Structure
8
3630657-3630877
(+)
cobalamin
3630913-3631591 (+)
blr3274
Blr3274 protein
blr3274
Single gene
DOOR ID:
1539643
blr3274
View Structure
9
3634102-3634304
(+)
cobalamin
3634386-3635895 (+)
blr3278
Blr3278 protein
blr3278
Single gene
DOOR ID:
1539647
blr3278
View Structure
10
4473773-4473825
(-)
mini-ykkC
4472438-4473446 (+)
blr4043
blr4043
Single gene
DOOR ID:
1540407
blr4043
View Structure
11
5279475-5279689
(-)
cobalamin
5277129-5279361 (-)
bll4766
Bll4766 protein
bll4766
Single gene
DOOR ID:
1541127
bll4766
View Structure
12
6318642-6318732
(+)
glycine
6318874-6320023 (+)
gcvT
blr5751
Single gene
DOOR ID:
1542107
blr5751
(gcvT)
View Structure
13
6499926-6500011
(-)
ZMP-ZTP
6497169-6498453 (-)
mdeA
bll5911
Single gene
DOOR ID:
1542267
bll5911
(mdeA)
View Structure
14
7330682-7330810
(+)
TPP
7331815-7332013 (+)
bsr6656
Bsr6656 protein
bsr6656
Single gene
DOOR ID:
1543009
bsr6656
View Structure
15
7516136-7516214
(-)
sam-alpha
7515341-7516088 (-)
bll6819
Bll6819 protein
bll6819
Single gene
DOOR ID:
1543172
bll6819
View Structure
16
8190375-8190549
(-)
FMN
8189707-8190298 (-)
ribH
6;7-dimethyl-8-ribityllumazine synthase 2 (DMRL synthase 2) (LS 2) (Lumazine synthase 2) (8)
bll7452
Single gene
DOOR ID:
1543800
bll7452
(ribH)
View Structure
Genome:
Bradyrhizobium japonicum USDA 110
(
NC_004463.1
);
Phylum:
Alphaproteobacteria
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gene";i:15;s:7:"1536958";i:16;s:13:"blr0581(purH)";i:17;s:47:"'de novo' IMP biosynthetic process [GO:0006189]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_004463.1";i:2;s:34:"Bradyrhizobium japonicum USDA 110 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1219699-1219778";i:6;s:1:"-";i:7;s:9:"sam-alpha";i:8;s:0:"";i:9;s:15:"1218435-1219689";i:10;s:1:"-";i:11;s:4:"metZ";i:12;s:0:"";i:13;s:7:"bll1105";i:14;s:11:"Single gene";i:15;s:7:"1537480";i:16;s:13:"bll1105(metZ)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_004463.1";i:2;s:34:"Bradyrhizobium japonicum USDA 110 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1515209-1515288";i:6;s:1:"+";i:7;s:9:"sam-alpha";i:8;s:0:"";i:9;s:15:"1515379-1516582";i:10;s:1:"+";i:11;s:4:"metX";i:12;s:74:"Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)";i:13;s:7:"blr1399";i:14;s:11:"Single gene";i:15;s:7:"1537774";i:16;s:13:"blr1399(metX)";i:17;s:87:"homoserine metabolic process [GO:0009092]; methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_004463.1";i:2;s:34:"Bradyrhizobium japonicum USDA 110 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2232793-2232995";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2233095-2235441";i:10;s:1:"+";i:11;s:7:"blr2068";i:12;s:172:"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)";i:13;s:7:"blr2068";i:14;s:11:"Single gene";i:15;s:7:"1538441";i:16;s:7:"blr2068";i:17;s:43:"homocysteine metabolic process [GO:0050667]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_004463.1";i:2;s:34:"Bradyrhizobium japonicum USDA 110 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2568283-2568373";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"2565881-2568116";i:10;s:1:"-";i:11;s:7:"bll2362";i:12;s:44:"Succinoglycan biosynthesis transport protein";i:13;s:7:"bll2362";i:14;s:11:"Single gene";i:15;s:7:"1538734";i:16;s:7:"bll2362";i:17;s:52:"lipopolysaccharide biosynthetic process [GO:0009103]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_004463.1";i:2;s:34:"Bradyrhizobium japonicum USDA 110 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2887315-2887392";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"2885976-2887185";i:10;s:1:"-";i:11;s:7:"bll2640";i:12;s:41:"Major facilitator superfamily transporter";i:13;s:7:"bll2640";i:14;s:11:"Single gene";i:15;s:7:"1539012";i:16;s:7:"bll2640";i:17;s:36:"transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_004463.1";i:2;s:34:"Bradyrhizobium japonicum USDA 110 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"3617290-3617510";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3617604-3617979";i:10;s:1:"+";i:11;s:7:"blr3262";i:12;s:15:"Blr3262 protein";i:13;s:7:"blr3262";i:14;s:11:"Single gene";i:15;s:7:"1539630";i:16;s:7:"blr3262";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_004463.1";i:2;s:34:"Bradyrhizobium japonicum USDA 110 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"3630657-3630877";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3630913-3631591";i:10;s:1:"+";i:11;s:7:"blr3274";i:12;s:15:"Blr3274 protein";i:13;s:7:"blr3274";i:14;s:11:"Single gene";i:15;s:7:"1539643";i:16;s:7:"blr3274";i:17;s:43:"transition metal ion transport [GO:0000041]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_004463.1";i:2;s:34:"Bradyrhizobium japonicum USDA 110 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"3634102-3634304";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3634386-3635895";i:10;s:1:"+";i:11;s:7:"blr3278";i:12;s:15:"Blr3278 protein";i:13;s:7:"blr3278";i:14;s:11:"Single gene";i:15;s:7:"1539647";i:16;s:7:"blr3278";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_004463.1";i:2;s:34:"Bradyrhizobium japonicum USDA 110 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"4473773-4473825";i:6;s:1:"-";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"4472438-4473446";i:10;s:1:"+";i:11;s:7:"blr4043";i:12;s:0:"";i:13;s:7:"blr4043";i:14;s:11:"Single gene";i:15;s:7:"1540407";i:16;s:7:"blr4043";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_004463.1";i:2;s:34:"Bradyrhizobium japonicum USDA 110 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"5279475-5279689";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"5277129-5279361";i:10;s:1:"-";i:11;s:7:"bll4766";i:12;s:15:"Bll4766 protein";i:13;s:7:"bll4766";i:14;s:11:"Single gene";i:15;s:7:"1541127";i:16;s:7:"bll4766";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_004463.1";i:2;s:34:"Bradyrhizobium japonicum USDA 110 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"6318642-6318732";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"6318874-6320023";i:10;s:1:"+";i:11;s:4:"gcvT";i:12;s:0:"";i:13;s:7:"blr5751";i:14;s:11:"Single gene";i:15;s:7:"1542107";i:16;s:13:"blr5751(gcvT)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_004463.1";i:2;s:34:"Bradyrhizobium japonicum USDA 110 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"6499926-6500011";i:6;s:1:"-";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:15:"6497169-6498453";i:10;s:1:"-";i:11;s:4:"mdeA";i:12;s:0:"";i:13;s:7:"bll5911";i:14;s:11:"Single gene";i:15;s:7:"1542267";i:16;s:13:"bll5911(mdeA)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_004463.1";i:2;s:34:"Bradyrhizobium japonicum USDA 110 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"7330682-7330810";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"7331815-7332013";i:10;s:1:"+";i:11;s:7:"bsr6656";i:12;s:15:"Bsr6656 protein";i:13;s:7:"bsr6656";i:14;s:11:"Single gene";i:15;s:7:"1543009";i:16;s:7:"bsr6656";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_004463.1";i:2;s:34:"Bradyrhizobium japonicum USDA 110 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"7516136-7516214";i:6;s:1:"-";i:7;s:9:"sam-alpha";i:8;s:0:"";i:9;s:15:"7515341-7516088";i:10;s:1:"-";i:11;s:7:"bll6819";i:12;s:15:"Bll6819 protein";i:13;s:7:"bll6819";i:14;s:11:"Single gene";i:15;s:7:"1543172";i:16;s:7:"bll6819";i:17;s:0:"";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_004463.1";i:2;s:34:"Bradyrhizobium japonicum USDA 110 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"8190375-8190549";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"8189707-8190298";i:10;s:1:"-";i:11;s:4:"ribH";i:12;s:92:"6;7-dimethyl-8-ribityllumazine synthase 2 (DMRL synthase 2) (LS 2) (Lumazine synthase 2) (8)";i:13;s:7:"bll7452";i:14;s:11:"Single gene";i:15;s:7:"1543800";i:16;s:13:"bll7452(ribH)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}}
