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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
15971-16071
(+)
SAM
16135-17104 (+)
SE0011
SE0011
Single gene
DOOR ID:
1535506
SE0011
View Structure
2
250176-250277
(-)
TPP
249207-250119 (-)
SE0251
SE0251
Single gene
DOOR ID:
1535619
SE0251
View Structure
3
327940-328039
(-)
TPP
327086-327845 (-)
fabG
SE0324
Operon
DOOR ID:
74918
SE0323,
SE0324
(fabG)
View Structure
4
477758-477804
(-)
PreQ1
476954-477626 (-)
SE0487
SE0487
Operon
DOOR ID:
74953
SE0485,
SE0486,
SE0487
View Structure
5
588095-588197
(+)
SAM
588290-589316 (+)
SE0600
SE0600
Operon
DOOR ID:
74977
SE0600,
SE0601,
SE0602
View Structure
6
711297-711420
(+)
yybP-ykoY
711491-712298 (+)
SE0721
SE0721
Single gene
DOOR ID:
1535842
SE0721
View Structure
7
765929-766031
(-)
TPP
765268-765844 (-)
SE0775
SE0775
Operon
DOOR ID:
75005
SE0773,
SE0774,
SE0775
View Structure
8
1086256-1086435
(+)
lysine
1086488-1087721 (+)
SE1073
SE1073
Operon
DOOR ID:
75071
SE1073,
SE1074,
SE1075
(dapA)
,
SE1076,
SE1077
View Structure
9
1211379-1211514
(-)
FMN
1210776-1211316 (-)
SE1174
SE1174
Single gene
DOOR ID:
1536005
SE1174
View Structure
10
1258815-1258957
(-)
glycine
1257644-1258736 (-)
gcvT
SE1222
Operon
DOOR ID:
75109
SE1220,
SE1221,
SE1222
(gcvT)
View Structure
11
1386732-1386907
(-)
lysine
1385023-1386526 (-)
SE1356
SE1356
Single gene
DOOR ID:
1536045
SE1356
View Structure
12
1493970-1494108
(-)
FMN
1492776-1493820 (-)
SE1441
SE1441
Operon
DOOR ID:
75153
SE1438
(ribH)
,
SE1439,
SE1440,
SE1441
View Structure
13
1508513-1508622
(-)
SAM
1507204-1508404 (-)
SE1458
SE1458
Single gene
DOOR ID:
1536094
SE1458
View Structure
14
1749053-1749151
(-)
TPP
1748291-1748981 (-)
SE1693
SE1693
Operon
DOOR ID:
75208
SE1690
(thiE)
,
SE1691,
SE1692,
SE1693
View Structure
15
1803983-1804200
(-)
glmS
1802008-1803814 (-)
SE1751
SE1751
Single gene
DOOR ID:
1536208
SE1751
View Structure
16
1940402-1940498
(-)
SAM
1938966-1940268 (-)
SE1902
SE1902
Single gene
DOOR ID:
1536265
SE1902
View Structure
17
2101479-2101588
(+)
TPP
2101774-2102257 (+)
SE2057
SE2057
Operon
DOOR ID:
75268
SE2057,
SE2058,
SE2059,
SE2060
(thiG)
,
SE2061
View Structure
18
2432945-2433047
(-)
purine
2432083-2432662 (-)
SE2350
SE2350
Operon
DOOR ID:
75318
SE2348,
SE2349,
SE2350
View Structure
Genome:
Staphylococcus epidermidis ATCC 12228
(
NC_004461.1
);
Phylum:
Firmicutes
a:19:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_004461.1";i:2;s:38:"Staphylococcus epidermidis ATCC 12228 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:11:"15971-16071";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:11:"16135-17104";i:10;s:1:"+";i:11;s:6:"SE0011";i:12;s:0:"";i:13;s:6:"SE0011";i:14;s:11:"Single gene";i:15;s:7:"1535506";i:16;s:6:"SE0011";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_004461.1";i:2;s:38:"Staphylococcus epidermidis ATCC 12228 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"250176-250277";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"249207-250119";i:10;s:1:"-";i:11;s:6:"SE0251";i:12;s:0:"";i:13;s:6:"SE0251";i:14;s:11:"Single gene";i:15;s:7:"1535619";i:16;s:6:"SE0251";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_004461.1";i:2;s:38:"Staphylococcus epidermidis ATCC 12228 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"327940-328039";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"327086-327845";i:10;s:1:"-";i:11;s:4:"fabG";i:12;s:0:"";i:13;s:6:"SE0324";i:14;s:6:"Operon";i:15;s:5:"74918";i:16;s:19:"SE0323;SE0324(fabG)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_004461.1";i:2;s:38:"Staphylococcus epidermidis ATCC 12228 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"477758-477804";i:6;s:1:"-";i:7;s:5:"PreQ1";i:8;s:0:"";i:9;s:13:"476954-477626";i:10;s:1:"-";i:11;s:6:"SE0487";i:12;s:0:"";i:13;s:6:"SE0487";i:14;s:6:"Operon";i:15;s:5:"74953";i:16;s:20:"SE0485;SE0486;SE0487";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_004461.1";i:2;s:38:"Staphylococcus epidermidis ATCC 12228 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"588095-588197";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"588290-589316";i:10;s:1:"+";i:11;s:6:"SE0600";i:12;s:0:"";i:13;s:6:"SE0600";i:14;s:6:"Operon";i:15;s:5:"74977";i:16;s:20:"SE0600;SE0601;SE0602";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_004461.1";i:2;s:38:"Staphylococcus epidermidis ATCC 12228 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"711297-711420";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:13:"711491-712298";i:10;s:1:"+";i:11;s:6:"SE0721";i:12;s:0:"";i:13;s:6:"SE0721";i:14;s:11:"Single 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";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1211379-1211514";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1210776-1211316";i:10;s:1:"-";i:11;s:6:"SE1174";i:12;s:0:"";i:13;s:6:"SE1174";i:14;s:11:"Single gene";i:15;s:7:"1536005";i:16;s:6:"SE1174";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_004461.1";i:2;s:38:"Staphylococcus epidermidis ATCC 12228 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1258815-1258957";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1257644-1258736";i:10;s:1:"-";i:11;s:4:"gcvT";i:12;s:0:"";i:13;s:6:"SE1222";i:14;s:6:"Operon";i:15;s:5:"75109";i:16;s:26:"SE1220;SE1221;SE1222(gcvT)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_004461.1";i:2;s:38:"Staphylococcus epidermidis ATCC 12228 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1386732-1386907";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1385023-1386526";i:10;s:1:"-";i:11;s:6:"SE1356";i:12;s:0:"";i:13;s:6:"SE1356";i:14;s:11:"Single 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";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1749053-1749151";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1748291-1748981";i:10;s:1:"-";i:11;s:6:"SE1693";i:12;s:0:"";i:13;s:6:"SE1693";i:14;s:6:"Operon";i:15;s:5:"75208";i:16;s:33:"SE1690(thiE);SE1691;SE1692;SE1693";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_004461.1";i:2;s:38:"Staphylococcus epidermidis ATCC 12228 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1803983-1804200";i:6;s:1:"-";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:15:"1802008-1803814";i:10;s:1:"-";i:11;s:6:"SE1751";i:12;s:0:"";i:13;s:6:"SE1751";i:14;s:11:"Single gene";i:15;s:7:"1536208";i:16;s:6:"SE1751";i:17;s:0:"";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_004461.1";i:2;s:38:"Staphylococcus epidermidis ATCC 12228 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1940402-1940498";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1938966-1940268";i:10;s:1:"-";i:11;s:6:"SE1902";i:12;s:0:"";i:13;s:6:"SE1902";i:14;s:11:"Single gene";i:15;s:7:"1536265";i:16;s:6:"SE1902";i:17;s:0:"";i:18;s:15:"View Structure ";}i:17;a:19:{i:0;i:17;i:1;s:11:"NC_004461.1";i:2;s:38:"Staphylococcus epidermidis ATCC 12228 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2101479-2101588";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2101774-2102257";i:10;s:1:"+";i:11;s:6:"SE2057";i:12;s:0:"";i:13;s:6:"SE2057";i:14;s:6:"Operon";i:15;s:5:"75268";i:16;s:40:"SE2057;SE2058;SE2059;SE2060(thiG);SE2061";i:17;s:0:"";i:18;s:15:"View Structure ";}i:18;a:19:{i:0;i:18;i:1;s:11:"NC_004461.1";i:2;s:38:"Staphylococcus epidermidis ATCC 12228 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2432945-2433047";i:6;s:1:"-";i:7;s:6:"purine";i:8;s:0:"";i:9;s:15:"2432083-2432662";i:10;s:1:"-";i:11;s:6:"SE2350";i:12;s:0:"";i:13;s:6:"SE2350";i:14;s:6:"Operon";i:15;s:5:"75318";i:16;s:20:"SE2348;SE2349;SE2350";i:17;s:0:"";i:18;s:15:"View Structure ";}}
