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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
79852-79951
(-)
TPP
78837-79821 (-)
tbpA
Thiamine-binding periplasmic protein
c0084
Operon
DOOR ID:
72789
c0082
(thiQ)
,
c0083
(thiP)
,
c0084
(tbpA)
View Structure
2
839533-839677
(+)
MOCO
840675-841188 (+)
moaB
Molybdenum cofactor biosynthesis protein B
c0863
Operon
DOOR ID:
72932
c0862
(moaA)
,
c0863
(moaB)
View Structure
3
2057128-2057229
(+)
yybP-ykoY
2057305-2057926 (+)
yebN
Probable manganese efflux pump MntP
c2228
Single gene
DOOR ID:
1531933
c2228
(yebN)
View Structure
4
2476008-2476104
(-)
TPP
2475184-2475973 (-)
thiM
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
c2631
Operon
DOOR ID:
73273
c2628
(yegW)
,
c2629
(yegX)
,
c2630
(thiD)
,
c2631
(thiM)
View Structure
5
3630363-3630511
(-)
FMN
3629605-3630259 (-)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
c3795
Single gene
DOOR ID:
1532415
c3795
(ribB)
View Structure
6
4695788-4695978
(+)
cobalamin
4696042-4697887 (+)
btuB
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
c4929
Operon
DOOR ID:
73767
c4929
(btuB)
,
c4930
(murI)
View Structure
7
4727387-4727487
(-)
TPP
4725410-4727318 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
c4951
Operon
DOOR ID:
73773
c4946
(thiH)
,
c4947
(thiG)
,
c4948
(thiS)
,
c4949
(thiF)
,
c4950
(thiE)
,
c4951
(thiC)
View Structure
8
4768999-4769195
(-)
lysine
4767557-4768907 (-)
lysC
Aspartokinase
c4990
Single gene
DOOR ID:
1532775
c4990
(lysC)
View Structure
9
4985532-4985578
(+)
mini-ykkC
4985909-4986443 (-)
blc
c5237
Operon
DOOR ID:
1110726
USDA257_c52360,
USDA257_c52370
View Structure
10
5084490-5084605
(+)
Mg sensor
5084698-5087395 (+)
mgtA
Mg(2+) transport ATPase; P-type 1
c5341
Single gene
DOOR ID:
1532903
c5341
(mgtA)
View Structure
Genome:
Escherichia coli CFT073
(
NC_004431.1
);
Phylum:
Gammaproteobacteria
a:11:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_004431.1";i:2;s:24:"Escherichia coli CFT073 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:11:"79852-79951";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:11:"78837-79821";i:10;s:1:"-";i:11;s:4:"tbpA";i:12;s:36:"Thiamine-binding periplasmic protein";i:13;s:5:"c0084";i:14;s:6:"Operon";i:15;s:5:"72789";i:16;s:35:"c0082(thiQ);c0083(thiP);c0084(tbpA)";i:17;s:69:"thiamine transport [GO:0015888]; transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_004431.1";i:2;s:24:"Escherichia coli CFT073 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"839533-839677";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:13:"840675-841188";i:10;s:1:"+";i:11;s:4:"moaB";i:12;s:42:"Molybdenum cofactor biosynthesis protein B";i:13;s:5:"c0863";i:14;s:6:"Operon";i:15;s:5:"72932";i:16;s:23:"c0862(moaA);c0863(moaB)";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_004431.1";i:2;s:24:"Escherichia coli CFT073 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2057128-2057229";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"2057305-2057926";i:10;s:1:"+";i:11;s:4:"yebN";i:12;s:35:"Probable manganese efflux pump MntP";i:13;s:5:"c2228";i:14;s:11:"Single gene";i:15;s:7:"1531933";i:16;s:11:"c2228(yebN)";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_004431.1";i:2;s:24:"Escherichia coli CFT073 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2476008-2476104";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2475184-2475973";i:10;s:1:"-";i:11;s:4:"thiM";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:5:"c2631";i:14;s:6:"Operon";i:15;s:5:"73273";i:16;s:47:"c2628(yegW);c2629(yegX);c2630(thiD);c2631(thiM)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_004431.1";i:2;s:24:"Escherichia coli CFT073 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3630363-3630511";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"3629605-3630259";i:10;s:1:"-";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:5:"c3795";i:14;s:11:"Single gene";i:15;s:7:"1532415";i:16;s:11:"c3795(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_004431.1";i:2;s:24:"Escherichia coli CFT073 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4695788-4695978";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4696042-4697887";i:10;s:1:"+";i:11;s:4:"btuB";i:12;s:89:"Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)";i:13;s:5:"c4929";i:14;s:6:"Operon";i:15;s:5:"73767";i:16;s:23:"c4929(btuB);c4930(murI)";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_004431.1";i:2;s:24:"Escherichia coli CFT073 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4727387-4727487";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4725410-4727318";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:5:"c4951";i:14;s:6:"Operon";i:15;s:5:"73773";i:16;s:71:"c4946(thiH);c4947(thiG);c4948(thiS);c4949(thiF);c4950(thiE);c4951(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_004431.1";i:2;s:24:"Escherichia coli CFT073 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4768999-4769195";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"4767557-4768907";i:10;s:1:"-";i:11;s:4:"lysC";i:12;s:14:"Aspartokinase ";i:13;s:5:"c4990";i:14;s:11:"Single gene";i:15;s:7:"1532775";i:16;s:11:"c4990(lysC)";i:17;s:105:"lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_004431.1";i:2;s:24:"Escherichia coli CFT073 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4985532-4985578";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"4985909-4986443";i:10;s:1:"-";i:11;s:3:"blc";i:12;s:0:"";i:13;s:5:"c5237";i:14;s:6:"Operon";i:15;s:7:"1110726";i:16;s:29:"USDA257_c52360;USDA257_c52370";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_004431.1";i:2;s:24:"Escherichia coli CFT073 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"5084490-5084605";i:6;s:1:"+";i:7;s:9:"Mg sensor";i:8;s:0:"";i:9;s:15:"5084698-5087395";i:10;s:1:"+";i:11;s:4:"mgtA";i:12;s:34:"Mg(2+) transport ATPase; P-type 1 ";i:13;s:5:"c5341";i:14;s:11:"Single gene";i:15;s:7:"1532903";i:16;s:11:"c5341(mgtA)";i:17;s:0:"";i:18;s:15:"View Structure ";}}
