About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
86391-86557
(-)
FMN
84240-85539 (+)
CE0080
CE0080
Single gene
DOOR ID:
1529945
CE0080
View Structure
2
584008-584078
(-)
cobalamin
581596-582529 (-)
CE0546
CE0546
Operon
DOOR ID:
72235
CE0543,
CE0544,
CE0545,
CE0546
View Structure
3
943971-944145
(-)
ydaO-yuaA
942985-943186 (+)
CE0893
CE0893
Single gene
DOOR ID:
1530228
CE0893
View Structure
4
1190813-1190922
(+)
TPP
1191603-1192974 (+)
CE1135
CE1135
Operon
DOOR ID:
72366
CE1134,
CE1135,
CE1136,
CE1137,
CE1138,
CE1139
View Structure
5
1194201-1194244
(+)
mini-ykkC
1194261-1195338 (+)
CE1138
CE1138
Operon
DOOR ID:
72366
CE1134,
CE1135,
CE1136,
CE1137,
CE1138,
CE1139
View Structure
6
1474108-1474220
(-)
TPP
1471324-1472167 (+)
CE1406
CE1406
Single gene
DOOR ID:
1530398
CE1406
View Structure
7
1474355-1474472
(+)
SAM-IV
1474931-1476272 (-)
CE1409
CE1409
Single gene
DOOR ID:
1530402
CE1409
View Structure
8
1672795-1672895
(-)
TPP
1669772-1671992 (-)
CE1591
Thiamine biosynthesis multifunctional protein ThiED [Includes: Thiamine-phosphate synthase (TMP-PPase) (TP synthase) (TPS) (Hydroxymethylpyrimidine kinase) (HMP kinase) (Hydroxymethylpyrimidine phosphate kinase) (HMP-P kinase) (HMP-phosphate kinase) (HMPP kinase)]
CE1591
Operon
DOOR ID:
72469
CE1591,
CE1592
View Structure
9
2042066-2042180
(+)
TPP
2042826-2043897 (+)
CE1934
CE1934
Operon
DOOR ID:
72549
CE1933
(thiE)
,
CE1934,
CE1935,
CE1936
(thiG)
,
CE1937
View Structure
10
2208936-2209111
(-)
ydaO-yuaA
2207092-2208013 (-)
CE2080
CE2080
Operon
DOOR ID:
72579
CE2079,
CE2080
View Structure
Genome:
Corynebacterium efficiens YS-314
(
NC_004369.1
);
Phylum:
Actinobacteria
a:11:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_004369.1";i:2;s:33:"Corynebacterium efficiens YS-314 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:11:"86391-86557";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:11:"84240-85539";i:10;s:1:"+";i:11;s:6:"CE0080";i:12;s:0:"";i:13;s:6:"CE0080";i:14;s:11:"Single gene";i:15;s:7:"1529945";i:16;s:6:"CE0080";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_004369.1";i:2;s:33:"Corynebacterium efficiens YS-314 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"584008-584078";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"581596-582529";i:10;s:1:"-";i:11;s:6:"CE0546";i:12;s:0:"";i:13;s:6:"CE0546";i:14;s:6:"Operon";i:15;s:5:"72235";i:16;s:27:"CE0543;CE0544;CE0545;CE0546";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_004369.1";i:2;s:33:"Corynebacterium efficiens YS-314 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"943971-944145";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:13:"942985-943186";i:10;s:1:"+";i:11;s:6:"CE0893";i:12;s:0:"";i:13;s:6:"CE0893";i:14;s:11:"Single gene";i:15;s:7:"1530228";i:16;s:6:"CE0893";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_004369.1";i:2;s:33:"Corynebacterium efficiens YS-314 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1190813-1190922";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1191603-1192974";i:10;s:1:"+";i:11;s:6:"CE1135";i:12;s:0:"";i:13;s:6:"CE1135";i:14;s:6:"Operon";i:15;s:5:"72366";i:16;s:41:"CE1134;CE1135;CE1136;CE1137;CE1138;CE1139";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_004369.1";i:2;s:33:"Corynebacterium efficiens YS-314 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1194201-1194244";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"1194261-1195338";i:10;s:1:"+";i:11;s:6:"CE1138";i:12;s:0:"";i:13;s:6:"CE1138";i:14;s:6:"Operon";i:15;s:5:"72366";i:16;s:41:"CE1134;CE1135;CE1136;CE1137;CE1138;CE1139";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_004369.1";i:2;s:33:"Corynebacterium efficiens YS-314 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1474108-1474220";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1471324-1472167";i:10;s:1:"+";i:11;s:6:"CE1406";i:12;s:0:"";i:13;s:6:"CE1406";i:14;s:11:"Single gene";i:15;s:7:"1530398";i:16;s:6:"CE1406";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_004369.1";i:2;s:33:"Corynebacterium efficiens YS-314 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1474355-1474472";i:6;s:1:"+";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"1474931-1476272";i:10;s:1:"-";i:11;s:6:"CE1409";i:12;s:0:"";i:13;s:6:"CE1409";i:14;s:11:"Single gene";i:15;s:7:"1530402";i:16;s:6:"CE1409";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_004369.1";i:2;s:33:"Corynebacterium efficiens YS-314 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1672795-1672895";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1669772-1671992";i:10;s:1:"-";i:11;s:6:"CE1591";i:12;s:265:"Thiamine biosynthesis multifunctional protein ThiED [Includes: Thiamine-phosphate synthase (TMP-PPase) (TP synthase) (TPS) (Hydroxymethylpyrimidine kinase) (HMP kinase) (Hydroxymethylpyrimidine phosphate kinase) (HMP-P kinase) (HMP-phosphate kinase) (HMPP kinase)]";i:13;s:6:"CE1591";i:14;s:6:"Operon";i:15;s:5:"72469";i:16;s:13:"CE1591;CE1592";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_004369.1";i:2;s:33:"Corynebacterium efficiens YS-314 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2042066-2042180";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2042826-2043897";i:10;s:1:"+";i:11;s:6:"CE1934";i:12;s:0:"";i:13;s:6:"CE1934";i:14;s:6:"Operon";i:15;s:5:"72549";i:16;s:46:"CE1933(thiE);CE1934;CE1935;CE1936(thiG);CE1937";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_004369.1";i:2;s:33:"Corynebacterium efficiens YS-314 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2208936-2209111";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"2207092-2208013";i:10;s:1:"-";i:11;s:6:"CE2080";i:12;s:0:"";i:13;s:6:"CE2080";i:14;s:6:"Operon";i:15;s:5:"72579";i:16;s:13:"CE2079;CE2080";i:17;s:0:"";i:18;s:15:"View Structure ";}}