Genome: Pseudomonas protegens Pf-5 (NC_004129.6); Phylum: Gammaproteobacteria
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 627657-627761 (+)TPP627924-629814 (+)thiC

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)		PFL_0538Single gene

DOOR ID: 1518995		PFL_0538 (thiC) View Structure
2 2504724-2504928 (-)cobalamin2501882-2502635 (-)PFL_2239

PFL_2239Operon

DOOR ID: 66266		PFL_2238,
PFL_2239,
PFL_2240		 View Structure
3 2922951-2923116 (+)yybP-ykoY2923121-2923694 (+)PFL_2642

Putative manganese efflux pump MntP		PFL_2642Single gene

DOOR ID: 1517593		PFL_2642 View Structure
4 3329807-3330012 (-)cobalamin3327081-3327381 (-)PFL_2969

PFL_2969Single gene

DOOR ID: 1517708		PFL_2969 View Structure
5 4227479-4227691 (-)cobalamin4226310-4227381 (-)cobW

Cobalamin biosynthesis protein CobW		PFL_3655Operon

DOOR ID: 66544		PFL_3654 (cobN),
PFL_3655 (cobW)		 View Structure
6 4227833-4228059 (+)cobalamin4228154-4228343 (+)cbtB

Putative cobalt transporter; subunit CbtB		PFL_3656Operon

DOOR ID: 66545		PFL_3656 (cbtB),
PFL_3657 (cbtA),
PFL_3658		 View Structure
7 5115332-5115385 (+)mini-ykkC5115403-5115721 (+)sugE_1

PFL_4408Single gene

DOOR ID: 1518246		PFL_4408 (sugE_1) View Structure
8 5141221-5141454 (-)cobalamin5140528-5141140 (-)cobO

Cob(I)yrinic acid a;c-diamide adenosyltransferase (7) (Cob(I)alamin adenosyltransferase) (Corrinoid adenosyltransferase)		PFL_4431Operon

DOOR ID: 66680		PFL_4422 (cobS),
PFL_4423 (cobC),
PFL_4424 (cobT),
PFL_4425 (cobU),
PFL_4426 (cobQ),
PFL_4427 (cobC),
PFL_4428 (cobD),
PFL_4429 (bluB),
PFL_4430 (cobB),
PFL_4431 (cobO)		 View Structure
9 5219613-5219783 (+)FMN5219904-5220414 (+)ribH

6;7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (LS) (Lumazine synthase) (8)		PFL_4508Single gene

DOOR ID: 1518282		PFL_4508 (ribH) View Structure
10 5372047-5372133 (-)SAH5369809-5371153 (-)PFL_4652

3-phosphoshikimate 1-carboxyvinyltransferase (9)		PFL_4652Operon

DOOR ID: 66722		PFL_4651,
PFL_4652,
PFL_4653		 View Structure
11 5888262-5888383 (+)yybP-ykoY5888475-5889060 (+)PFL_5123

Membrane protein; UPF0016 family		PFL_5123Single gene

DOOR ID: 1516880		PFL_5123 View Structure
12 6604864-6604970 (+)SAH6604991-6606401 (+)ahcY

Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)		PFL_5798Single gene

DOOR ID: 1518697		PFL_5798 (ahcY) View Structure