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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
352438-352700
(+)
cobalamin
352768-354664 (+)
btuB
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
y0325
Operon
DOOR ID:
65087
y0325
(btuB)
,
y0326
(murI)
View Structure
2
555247-555372
(-)
TPP
553067-555113 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
y0491
Operon
DOOR ID:
65118
y0489
(thiF)
,
y0490
(thiE)
,
y0491
(thiC)
View Structure
3
692495-692541
(+)
mini-ykkC
693039-693396 (-)
frdD
y0614
Single gene
DOOR ID:
1806303
MGAS9429_Spy0614
(sagA)
View Structure
4
1314302-1314365
(-)
fluoride
1313817-1314207 (-)
ccrB
Putative fluoride ion transporter CrcB 1
y1168
Single gene
DOOR ID:
1513676
y1168
(ccrB)
View Structure
5
1522876-1522980
(+)
TPP
1523103-1523904 (+)
thiD
Phosphomethylpyrimidine kinase (Putative phosphomethylpyrimidine kinase)
y1373
Single gene
DOOR ID:
1513766
y1373
(thiD)
View Structure
6
2816600-2816799
(+)
yybP-ykoY
2816809-2817379 (+)
y2555
Putative manganese efflux pump MntP
y2555
Single gene
DOOR ID:
1514294
y2555
View Structure
7
3329941-3330087
(-)
MOCO
3329696-3329906 (+)
moaA
y3022
Single gene
DOOR ID:
1514515
y3022
View Structure
8
3904638-3904827
(-)
FMN
3903742-3904396 (-)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
y3520
Single gene
DOOR ID:
1514707
y3520
(ribB)
View Structure
9
4051404-4051541
(+)
TPP
4051615-4052608 (+)
tbpA
Thiamin-binding periplasmic protein of ABC transporter
y3651
Operon
DOOR ID:
65705
y3651
(tbpA)
,
y3652
(thiP)
,
y3653
(thiQ)
View Structure
Genome:
Yersinia pestis KIM10+
(
NC_004088.1
);
Phylum:
Gammaproteobacteria
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