Genome: Yersinia pestis KIM10+ (NC_004088.1); Phylum: Gammaproteobacteria
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 352438-352700 (+)cobalamin352768-354664 (+)btuB

Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)

DOOR ID: 65087
y0325 (btuB),
y0326 (murI)
View Structure
2 555247-555372 (-)TPP553067-555113 (-)thiC

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)

DOOR ID: 65118
y0489 (thiF),
y0490 (thiE),
y0491 (thiC)
View Structure
3 692495-692541 (+)mini-ykkC693039-693396 (-)frdD

y0614Single gene

DOOR ID: 1806303
MGAS9429_Spy0614 (sagA) View Structure
4 1314302-1314365 (-)fluoride1313817-1314207 (-)ccrB

Putative fluoride ion transporter CrcB 1
y1168Single gene

DOOR ID: 1513676
y1168 (ccrB) View Structure
5 1522876-1522980 (+)TPP1523103-1523904 (+)thiD

Phosphomethylpyrimidine kinase (Putative phosphomethylpyrimidine kinase)
y1373Single gene

DOOR ID: 1513766
y1373 (thiD) View Structure
6 2816600-2816799 (+)yybP-ykoY2816809-2817379 (+)y2555

Putative manganese efflux pump MntP
y2555Single gene

DOOR ID: 1514294
y2555 View Structure
7 3329941-3330087 (-)MOCO3329696-3329906 (+)moaA

y3022Single gene

DOOR ID: 1514515
y3022 View Structure
8 3904638-3904827 (-)FMN3903742-3904396 (-)ribB

3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
y3520Single gene

DOOR ID: 1514707
y3520 (ribB) View Structure
9 4051404-4051541 (+)TPP4051615-4052608 (+)tbpA

Thiamin-binding periplasmic protein of ABC transporter

DOOR ID: 65705
y3651 (tbpA),
y3652 (thiP),
y3653 (thiQ)
View Structure