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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
157527-157682
(+)
glmS
157873-159676 (+)
glmS
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)
BA_0159
Operon
DOOR ID:
63485
BA_0158,
BA_0159
(glmS)
View Structure
2
393914-394023
(+)
TPP
394095-394902 (+)
thiM
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
BA_0376
Operon
DOOR ID:
63518
BA_0376
(thiM)
,
BA_0377
(thiE)
View Structure
3
399319-399421
(+)
TPP
399520-399841 (+)
BA_0380
Thiamine-binding protein (UPF0045 protein CPE1503)
BA_0380
Operon
DOOR ID:
63519
BA_0380,
BA_0381,
BA_0382,
BA_0383
View Structure
4
752098-752210
(+)
TPP
752458-753154 (+)
BA_0725
Aminopyrimidine aminohydrolase
BA_0725
Operon
DOOR ID:
63581
BA_0725,
BA_0726,
BA_0727,
BA_0728,
BA_0729
(tenI)
,
BA_0730
(goxB)
,
BA_0731,
BA_0732
(thiG)
,
BA_0733,
BA_0734
(thiD-1)
View Structure
5
752271-752374
(+)
TPP
752458-753154 (+)
BA_0725
Aminopyrimidine aminohydrolase
BA_0725
Operon
DOOR ID:
63581
BA_0725,
BA_0726,
BA_0727,
BA_0728,
BA_0729
(tenI)
,
BA_0730
(goxB)
,
BA_0731,
BA_0732
(thiG)
,
BA_0733,
BA_0734
(thiD-1)
View Structure
6
760271-760418
(+)
ydaO-yuaA
760502-760898 (+)
BA_0735
BA_0735
Operon
DOOR ID:
63582
BA_0735,
BA_0736,
BA_0737
View Structure
7
761407-761552
(+)
ydaO-yuaA
761651-761756 (+)
BA_0738
Signal peptide protein (SipW-cognate class signal peptide)
BA_0738
Operon
DOOR ID:
63583
BA_0738,
BA_5871
(kdpF)
,
BA_0739
(kdpA)
,
BA_0740
(kdpB)
,
BA_0741
(kdpC)
,
BA_0742
(kdpD)
View Structure
8
1269003-1269167
(-)
yybP-ykoY
1268116-1268911 (-)
BA_1322
Membrane protein; TerC family
BA_1322
Single gene
DOOR ID:
1510221
BA_1322
View Structure
9
1422565-1422704
(+)
FMN
1422865-1423444 (+)
BA_1502
Riboflavin transporter
BA_1502
Single gene
DOOR ID:
1510306
BA_1502
View Structure
10
2433591-2433696
(+)
TPP
2433819-2434509 (+)
tenA
Aminopyrimidine aminohydrolase
BA_2611
Single gene
DOOR ID:
1510818
BA_2611
(tenA)
View Structure
11
3136893-3137034
(+)
ydaO-yuaA
3137131-3137275 (+)
BA_3413
BA_3413
Single gene
DOOR ID:
1511194
BA_3413
View Structure
12
3859224-3859412
(+)
cobalamin
3859539-3861828 (+)
metE
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)
BA_4218
Single gene
DOOR ID:
1511509
BA_4218
(metE)
View Structure
13
3953886-3954029
(+)
FMN
3954340-3955453 (+)
ribD
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
BA_4331
Operon
DOOR ID:
64181
BA_4331
(ribD)
,
BA_4332
(ribE)
,
BA_4333
(ribBA)
,
BA_4334
(ribH)
View Structure
14
3963428-3963490
(-)
glutamine
3961959-3962688 (-)
bioD
ATP-dependent dethiobiotin synthetase BioD (DTB synthetase) (DTBS) (Dethiobiotin synthase)
BA_4340
Operon
DOOR ID:
64182
BA_4336
(bioB)
,
BA_4337,
BA_4338,
BA_4339
(bioF)
,
BA_4340
(bioD)
,
BA_4341
(bioA)
View Structure
15
4589425-4589526
(+)
TPP
4589612-4590281 (+)
BA_5066
Energy-coupled thiamine transporter ThiT (Probable proton-coupled thiamine transporter YuaJ)
BA_5066
Single gene
DOOR ID:
1511848
BA_5066
View Structure
16
4823733-4823792
(+)
fluoride
4823837-4824251 (+)
ccrB
Putative fluoride ion transporter CrcB 1
BA_5319
Operon
DOOR ID:
64374
BA_5319
(ccrB)
,
BA_5320
(ccrB)
View Structure
17
4953387-4953502
(-)
TPP
4951513-4953274 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
BA_5463
Single gene
DOOR ID:
1512016
BA_5463
(thiC)
View Structure
Genome:
Bacillus anthracis str. Ames
(
NC_003997.3
);
Phylum:
Firmicutes
a:18:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_003997.3";i:2;s:29:"Bacillus anthracis str. Ames ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"157527-157682";i:6;s:1:"+";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:13:"157873-159676";i:10;s:1:"+";i:11;s:4:"glmS";i:12;s:240:"Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)";i:13;s:7:"BA_0159";i:14;s:6:"Operon";i:15;s:5:"63485";i:16;s:21:"BA_0158;BA_0159(glmS)";i:17;s:99:"carbohydrate derivative biosynthetic process [GO:1901137]; glutamine metabolic process [GO:0006541]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_003997.3";i:2;s:29:"Bacillus anthracis str. Ames ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"393914-394023";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"394095-394902";i:10;s:1:"+";i:11;s:4:"thiM";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:7:"BA_0376";i:14;s:6:"Operon";i:15;s:5:"63518";i:16;s:27:"BA_0376(thiM);BA_0377(thiE)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_003997.3";i:2;s:29:"Bacillus anthracis str. Ames ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"399319-399421";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"399520-399841";i:10;s:1:"+";i:11;s:7:"BA_0380";i:12;s:50:"Thiamine-binding protein (UPF0045 protein CPE1503)";i:13;s:7:"BA_0380";i:14;s:6:"Operon";i:15;s:5:"63519";i:16;s:31:"BA_0380;BA_0381;BA_0382;BA_0383";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_003997.3";i:2;s:29:"Bacillus anthracis str. Ames ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"752098-752210";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:6:"Tandem";i:9;s:13:"752458-753154";i:10;s:1:"+";i:11;s:7:"BA_0725";i:12;s:31:"Aminopyrimidine aminohydrolase ";i:13;s:7:"BA_0725";i:14;s:6:"Operon";i:15;s:5:"63581";i:16;s:105:"BA_0725;BA_0726;BA_0727;BA_0728;BA_0729(tenI);BA_0730(goxB);BA_0731;BA_0732(thiG);BA_0733;BA_0734(thiD-1)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_003997.3";i:2;s:29:"Bacillus anthracis str. Ames ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"752271-752374";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:6:"Tandem";i:9;s:13:"752458-753154";i:10;s:1:"+";i:11;s:7:"BA_0725";i:12;s:31:"Aminopyrimidine aminohydrolase ";i:13;s:7:"BA_0725";i:14;s:6:"Operon";i:15;s:5:"63581";i:16;s:105:"BA_0725;BA_0726;BA_0727;BA_0728;BA_0729(tenI);BA_0730(goxB);BA_0731;BA_0732(thiG);BA_0733;BA_0734(thiD-1)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_003997.3";i:2;s:29:"Bacillus anthracis str. Ames ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"760271-760418";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:13:"760502-760898";i:10;s:1:"+";i:11;s:7:"BA_0735";i:12;s:0:"";i:13;s:7:"BA_0735";i:14;s:6:"Operon";i:15;s:5:"63582";i:16;s:23:"BA_0735;BA_0736;BA_0737";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_003997.3";i:2;s:29:"Bacillus anthracis str. Ames ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"761407-761552";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:13:"761651-761756";i:10;s:1:"+";i:11;s:7:"BA_0738";i:12;s:58:"Signal peptide protein (SipW-cognate class signal peptide)";i:13;s:7:"BA_0738";i:14;s:6:"Operon";i:15;s:5:"63583";i:16;s:77:"BA_0738;BA_5871(kdpF);BA_0739(kdpA);BA_0740(kdpB);BA_0741(kdpC);BA_0742(kdpD)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_003997.3";i:2;s:29:"Bacillus anthracis str. Ames ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1269003-1269167";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1268116-1268911";i:10;s:1:"-";i:11;s:7:"BA_1322";i:12;s:29:"Membrane protein; TerC family";i:13;s:7:"BA_1322";i:14;s:11:"Single gene";i:15;s:7:"1510221";i:16;s:7:"BA_1322";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_003997.3";i:2;s:29:"Bacillus anthracis str. Ames ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1422565-1422704";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1422865-1423444";i:10;s:1:"+";i:11;s:7:"BA_1502";i:12;s:22:"Riboflavin transporter";i:13;s:7:"BA_1502";i:14;s:11:"Single gene";i:15;s:7:"1510306";i:16;s:7:"BA_1502";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_003997.3";i:2;s:29:"Bacillus anthracis str. Ames ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2433591-2433696";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2433819-2434509";i:10;s:1:"+";i:11;s:4:"tenA";i:12;s:31:"Aminopyrimidine aminohydrolase ";i:13;s:7:"BA_2611";i:14;s:11:"Single gene";i:15;s:7:"1510818";i:16;s:13:"BA_2611(tenA)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_003997.3";i:2;s:29:"Bacillus anthracis str. Ames ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"3136893-3137034";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"3137131-3137275";i:10;s:1:"+";i:11;s:7:"BA_3413";i:12;s:0:"";i:13;s:7:"BA_3413";i:14;s:11:"Single gene";i:15;s:7:"1511194";i:16;s:7:"BA_3413";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_003997.3";i:2;s:29:"Bacillus anthracis str. Ames ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"3859224-3859412";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3859539-3861828";i:10;s:1:"+";i:11;s:4:"metE";i:12;s:172:"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)";i:13;s:7:"BA_4218";i:14;s:11:"Single gene";i:15;s:7:"1511509";i:16;s:13:"BA_4218(metE)";i:17;s:44:"methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_003997.3";i:2;s:29:"Bacillus anthracis str. Ames ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"3953886-3954029";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"3954340-3955453";i:10;s:1:"+";i:11;s:4:"ribD";i:12;s:140:"Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]";i:13;s:7:"BA_4331";i:14;s:6:"Operon";i:15;s:5:"64181";i:16;s:56:"BA_4331(ribD);BA_4332(ribE);BA_4333(ribBA);BA_4334(ribH)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_003997.3";i:2;s:29:"Bacillus anthracis str. Ames ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"3963428-3963490";i:6;s:1:"-";i:7;s:9:"glutamine";i:8;s:0:"";i:9;s:15:"3961959-3962688";i:10;s:1:"-";i:11;s:4:"bioD";i:12;s:91:"ATP-dependent dethiobiotin synthetase BioD (DTB synthetase) (DTBS) (Dethiobiotin synthase)";i:13;s:7:"BA_4340";i:14;s:6:"Operon";i:15;s:5:"64182";i:16;s:71:"BA_4336(bioB);BA_4337;BA_4338;BA_4339(bioF);BA_4340(bioD);BA_4341(bioA)";i:17;s:40:"biotin biosynthetic process [GO:0009102]";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_003997.3";i:2;s:29:"Bacillus anthracis str. Ames ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"4589425-4589526";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4589612-4590281";i:10;s:1:"+";i:11;s:7:"BA_5066";i:12;s:92:"Energy-coupled thiamine transporter ThiT (Probable proton-coupled thiamine transporter YuaJ)";i:13;s:7:"BA_5066";i:14;s:11:"Single gene";i:15;s:7:"1511848";i:16;s:7:"BA_5066";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_003997.3";i:2;s:29:"Bacillus anthracis str. Ames ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"4823733-4823792";i:6;s:1:"+";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"4823837-4824251";i:10;s:1:"+";i:11;s:4:"ccrB";i:12;s:40:"Putative fluoride ion transporter CrcB 1";i:13;s:7:"BA_5319";i:14;s:6:"Operon";i:15;s:5:"64374";i:16;s:27:"BA_5319(ccrB);BA_5320(ccrB)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:17;a:19:{i:0;i:17;i:1;s:11:"NC_003997.3";i:2;s:29:"Bacillus anthracis str. Ames ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"4953387-4953502";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4951513-4953274";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:7:"BA_5463";i:14;s:11:"Single gene";i:15;s:7:"1512016";i:16;s:13:"BA_5463(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}}