About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
15949-16047
(+)
SAM
16107-17076 (+)
MW0012
MW0012 protein
MW0012
Single gene
DOOR ID:
1508471
MW0012
View Structure
2
410546-410648
(+)
purine
410878-411457 (+)
xprT
Xanthine phosphoribosyltransferase (XPRTase) (2)
MW0364
Operon
DOOR ID:
63020
MW0364
(xprT)
,
MW0365
(pbuX)
,
MW0366
(guaB)
,
MW0367
(guaA)
View Structure
3
756824-756870
(-)
PreQ1
755985-756654 (-)
MW0674
7-cyano-7-deazaguanine synthase (0) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein QueC)
MW0674
Operon
DOOR ID:
63085
MW0672,
MW0673,
MW0674
View Structure
4
877050-877153
(+)
SAM
877241-878267 (+)
MW0790
Methionine import ATP-binding protein MetN 2
MW0790
Operon
DOOR ID:
63107
MW0790,
MW0791,
MW0792
View Structure
5
918532-918622
(+)
preQ1-II
919627-920005 (+)
MW0837
MW0837 protein
MW0837
Single gene
DOOR ID:
1508829
MW0837
View Structure
6
995865-995971
(+)
yybP-ykoY
996046-996850 (+)
MW0902
MW0902 protein
MW0902
Single gene
DOOR ID:
1508852
MW0902
View Structure
7
1057611-1057711
(-)
TPP
1056958-1057534 (-)
MW0960
MW0960
Operon
DOOR ID:
63140
MW0958,
MW0959,
MW0960
View Structure
8
1401232-1401407
(+)
lysine
1401488-1402694 (+)
lysC
MW1281
Operon
DOOR ID:
63205
MW1281
(lysC)
,
MW1282
(asd)
,
MW1283
(dapA)
,
MW1284
(dapB)
,
MW1285
(dapD)
View Structure
9
1525657-1525791
(-)
FMN
1525049-1525595 (-)
MW1373
Riboflavin transporter
MW1373
Single gene
DOOR ID:
1509029
MW1373
View Structure
10
1622413-1622510
(-)
glycine
1621246-1622338 (-)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
MW1489
Operon
DOOR ID:
63249
MW1487,
MW1488,
MW1489
(gcvT)
View Structure
11
1752763-1752938
(-)
lysine
1751124-1752618 (-)
lysP
MW1625
Single gene
DOOR ID:
1509088
MW1625
(lysP)
View Structure
12
1866252-1866387
(-)
FMN
1865081-1866125 (-)
ribD
MW1711
Operon
DOOR ID:
63295
MW1708
(ribH)
,
MW1709
(ribA)
,
MW1710
(ribB)
,
MW1711
(ribD)
View Structure
13
1880710-1880821
(-)
SAM
1879410-1880604 (-)
metK
S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)
MW1728
Single gene
DOOR ID:
1509143
MW1728
(metK)
View Structure
14
2176559-2176661
(-)
TPP
2175789-2176479 (-)
MW2017
Aminopyrimidine aminohydrolase (Thiaminase II)
MW2017
Operon
DOOR ID:
63363
MW2014
(thiE)
,
MW2015
(thiM)
,
MW2016
(thiD)
,
MW2017
View Structure
15
2232027-2232243
(-)
glmS
2230019-2231825 (-)
glmS
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)
MW2080
Single gene
DOOR ID:
1509275
MW2080
(glmS)
View Structure
16
2393764-2393859
(-)
SAM
2392373-2393753 (-)
MW2247
MW2247 protein
MW2247
Single gene
DOOR ID:
1509346
MW2247
View Structure
Genome:
Staphylococcus aureus subsp. aureus MW2
(
NC_003923.1
);
Phylum:
Firmicutes
a:17:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_003923.1";i:2;s:39:"Staphylococcus aureus subsp. aureus MW2";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:11:"15949-16047";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:11:"16107-17076";i:10;s:1:"+";i:11;s:6:"MW0012";i:12;s:14:"MW0012 protein";i:13;s:6:"MW0012";i:14;s:11:"Single gene";i:15;s:7:"1508471";i:16;s:6:"MW0012";i:17;s:53:"cellular amino acid biosynthetic process [GO:0008652]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_003923.1";i:2;s:39:"Staphylococcus aureus subsp. aureus MW2";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"410546-410648";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"410878-411457";i:10;s:1:"+";i:11;s:4:"xprT";i:12;s:48:"Xanthine phosphoribosyltransferase (XPRTase) (2)";i:13;s:6:"MW0364";i:14;s:6:"Operon";i:15;s:5:"63020";i:16;s:51:"MW0364(xprT);MW0365(pbuX);MW0366(guaB);MW0367(guaA)";i:17;s:109:"purine ribonucleoside salvage [GO:0006166]; xanthine metabolic process [GO:0046110]; XMP salvage [GO:0032265]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_003923.1";i:2;s:39:"Staphylococcus aureus subsp. aureus MW2";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"756824-756870";i:6;s:1:"-";i:7;s:5:"PreQ1";i:8;s:0:"";i:9;s:13:"755985-756654";i:10;s:1:"-";i:11;s:6:"MW0674";i:12;s:126:"7-cyano-7-deazaguanine synthase (0) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein QueC)";i:13;s:6:"MW0674";i:14;s:6:"Operon";i:15;s:5:"63085";i:16;s:20:"MW0672;MW0673;MW0674";i:17;s:43:"queuosine biosynthetic process [GO:0008616]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_003923.1";i:2;s:39:"Staphylococcus aureus subsp. aureus MW2";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"877050-877153";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"877241-878267";i:10;s:1:"+";i:11;s:6:"MW0790";i:12;s:45:"Methionine import ATP-binding protein MetN 2 ";i:13;s:6:"MW0790";i:14;s:6:"Operon";i:15;s:5:"63107";i:16;s:20:"MW0790;MW0791;MW0792";i:17;s:33:"methionine transport [GO:0015821]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_003923.1";i:2;s:39:"Staphylococcus aureus subsp. aureus MW2";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"918532-918622";i:6;s:1:"+";i:7;s:8:"preQ1-II";i:8;s:0:"";i:9;s:13:"919627-920005";i:10;s:1:"+";i:11;s:6:"MW0837";i:12;s:14:"MW0837 protein";i:13;s:6:"MW0837";i:14;s:11:"Single gene";i:15;s:7:"1508829";i:16;s:6:"MW0837";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_003923.1";i:2;s:39:"Staphylococcus aureus subsp. aureus MW2";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"995865-995971";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:13:"996046-996850";i:10;s:1:"+";i:11;s:6:"MW0902";i:12;s:14:"MW0902 protein";i:13;s:6:"MW0902";i:14;s:11:"Single gene";i:15;s:7:"1508852";i:16;s:6:"MW0902";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_003923.1";i:2;s:39:"Staphylococcus aureus subsp. aureus MW2";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1057611-1057711";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1056958-1057534";i:10;s:1:"-";i:11;s:6:"MW0960";i:12;s:0:"";i:13;s:6:"MW0960";i:14;s:6:"Operon";i:15;s:5:"63140";i:16;s:20:"MW0958;MW0959;MW0960";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_003923.1";i:2;s:39:"Staphylococcus aureus subsp. aureus MW2";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1401232-1401407";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1401488-1402694";i:10;s:1:"+";i:11;s:4:"lysC";i:12;s:0:"";i:13;s:6:"MW1281";i:14;s:6:"Operon";i:15;s:5:"63205";i:16;s:63:"MW1281(lysC);MW1282(asd);MW1283(dapA);MW1284(dapB);MW1285(dapD)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_003923.1";i:2;s:39:"Staphylococcus aureus subsp. aureus MW2";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1525657-1525791";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1525049-1525595";i:10;s:1:"-";i:11;s:6:"MW1373";i:12;s:22:"Riboflavin transporter";i:13;s:6:"MW1373";i:14;s:11:"Single gene";i:15;s:7:"1509029";i:16;s:6:"MW1373";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_003923.1";i:2;s:39:"Staphylococcus aureus subsp. aureus MW2";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1622413-1622510";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1621246-1622338";i:10;s:1:"-";i:11;s:4:"gcvT";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:6:"MW1489";i:14;s:6:"Operon";i:15;s:5:"63249";i:16;s:26:"MW1487;MW1488;MW1489(gcvT)";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_003923.1";i:2;s:39:"Staphylococcus aureus subsp. aureus MW2";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1752763-1752938";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1751124-1752618";i:10;s:1:"-";i:11;s:4:"lysP";i:12;s:0:"";i:13;s:6:"MW1625";i:14;s:11:"Single gene";i:15;s:7:"1509088";i:16;s:12:"MW1625(lysP)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_003923.1";i:2;s:39:"Staphylococcus aureus subsp. aureus MW2";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1866252-1866387";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1865081-1866125";i:10;s:1:"-";i:11;s:4:"ribD";i:12;s:0:"";i:13;s:6:"MW1711";i:14;s:6:"Operon";i:15;s:5:"63295";i:16;s:51:"MW1708(ribH);MW1709(ribA);MW1710(ribB);MW1711(ribD)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_003923.1";i:2;s:39:"Staphylococcus aureus subsp. aureus MW2";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1880710-1880821";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1879410-1880604";i:10;s:1:"-";i:11;s:4:"metK";i:12;s:87:"S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)";i:13;s:6:"MW1728";i:14;s:11:"Single gene";i:15;s:7:"1509143";i:16;s:12:"MW1728(metK)";i:17;s:97:"one-carbon metabolic process [GO:0006730]; S-adenosylmethionine biosynthetic process [GO:0006556]";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_003923.1";i:2;s:39:"Staphylococcus aureus subsp. aureus MW2";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2176559-2176661";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2175789-2176479";i:10;s:1:"-";i:11;s:6:"MW2017";i:12;s:47:"Aminopyrimidine aminohydrolase (Thiaminase II)";i:13;s:6:"MW2017";i:14;s:6:"Operon";i:15;s:5:"63363";i:16;s:45:"MW2014(thiE);MW2015(thiM);MW2016(thiD);MW2017";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_003923.1";i:2;s:39:"Staphylococcus aureus subsp. aureus MW2";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2232027-2232243";i:6;s:1:"-";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:15:"2230019-2231825";i:10;s:1:"-";i:11;s:4:"glmS";i:12;s:240:"Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)";i:13;s:6:"MW2080";i:14;s:11:"Single gene";i:15;s:7:"1509275";i:16;s:12:"MW2080(glmS)";i:17;s:99:"carbohydrate derivative biosynthetic process [GO:1901137]; glutamine metabolic process [GO:0006541]";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_003923.1";i:2;s:39:"Staphylococcus aureus subsp. aureus MW2";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2393764-2393859";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"2392373-2393753";i:10;s:1:"-";i:11;s:6:"MW2247";i:12;s:14:"MW2247 protein";i:13;s:6:"MW2247";i:14;s:11:"Single gene";i:15;s:7:"1509346";i:16;s:6:"MW2247";i:17;s:0:"";i:18;s:15:"View Structure ";}}