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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
888098-888276
(+)
FMN
888444-889047 (+)
ribE
Riboflavin synthase alpha chain
XAC0748
Operon
DOOR ID:
62207
XAC0748
(ribE)
,
XAC0749
(ribA)
View Structure
2
955456-955568
(-)
SAH
953981-955424 (-)
sahH
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
XAC0804
Single gene
DOOR ID:
1506846
XAC0804
(sahH)
View Structure
3
1392356-1392470
(-)
glycine
1389322-1392256 (-)
gcvP
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
XAC1214
Single gene
DOOR ID:
1506991
XAC1214
(gcvP)
View Structure
4
2352963-2353030
(+)
fluoride
2353138-2353540 (+)
XAC2011
Putative fluoride ion transporter CrcB
XAC2011
Single gene
DOOR ID:
1507299
XAC2011
View Structure
5
3557901-3558021
(-)
SAM
3556798-3557830 (-)
metA
Homoserine O-succinyltransferase (HST) (6) (Homoserine transsuccinylase) (HTS)
XAC3040
Operon
DOOR ID:
62674
XAC3038,
XAC3039
(metB)
,
XAC3040
(metA)
View Structure
6
3758225-3758448
(-)
cobalamin
3756233-3758114 (-)
btuB
Outer membrane receptor for transport of vitamin B
XAC3194
Single gene
DOOR ID:
1507727
XAC3194
(btuB)
View Structure
7
4064348-4064445
(-)
TPP
4062378-4064256 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
XAC3447
Single gene
DOOR ID:
1507845
XAC3447
(thiC)
View Structure
8
4930325-4930485
(+)
yybP-ykoY
4930497-4931082 (+)
XAC4192
Putative manganese efflux pump MntP
XAC4192
Single gene
DOOR ID:
1508168
XAC4192
View Structure
Genome:
Xanthomonas axonopodis pv. citri str. 306
(
NC_003919.1
);
Phylum:
Gammaproteobacteria
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