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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
68041-68171
(-)
TPP
65522-67703 (-)
CPS_0067
TonB-dependent receptor
CPS_0067
Operon
DOOR ID:
59977
CPS_0064,
CPS_0065,
CPS_0066,
CPS_0067
View Structure
2
253282-253379
(+)
TPP
253518-255495 (+)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
CPS_0250
Operon
DOOR ID:
60020
CPS_0250
(thiC)
,
CPS_0251,
CPS_0252
(thiS)
,
CPS_0253
(thiG)
View Structure
3
807375-807459
(+)
c-di-GMP-I
807551-809372 (+)
CPS_0788
Thermostable serine protease; subtilase family
CPS_0788
single gene
DOOR ID:
1504523
CPS_0788
View Structure
4
1167801-1168012
(+)
cobalamin
1168296-1168926 (+)
CPS_1146
Putative membrane protein
CPS_1146
Single gene
DOOR ID:
1504751
CPS_1146
View Structure
5
1185608-1186048
(-)
cobalamin
1183703-1185572 (-)
btuB
TonB-dependent vitamin B12 receptor
CPS_1162
Single gene
DOOR ID:
1504738
CPS_1162
(btuB)
View Structure
6
1189539-1189693
(-)
cobalamin
1188679-1189510 (-)
CPS_1166
Putative vitamin B12 transport ATP-binding protein BtuD
CPS_1166
Operon
DOOR ID:
60182
CPS_1163,
CPS_1164
(cobO2)
,
CPS_1165,
CPS_1166
View Structure
7
1401691-1401790
(+)
purine
1401867-1402878 (+)
add1
Adenine deaminase (ADE) (Adenine aminohydrolase) (AAH)
CPS_1359
Single gene
DOOR ID:
1502958
CPS_1359
(add1)
View Structure
8
1642430-1642525
(-)
c-di-GMP-I
1642011-1642413 (-)
CPS_1596
Conserved domain protein
CPS_1596
single gene
DOOR ID:
1503515
CPS_1596
View Structure
9
2074691-2074911
(+)
lysine
2075059-2076430 (+)
lysC
Aspartokinase
CPS_2004
Single gene
DOOR ID:
1503754
CPS_2004
(lysC)
View Structure
10
4612611-4612693
(+)
c-di-GMP-I
4612998-4614786 (-)
CPS_4378
Uncharacterized protein
CPS_4378
single gene
DOOR ID:
1504326
CPS_4378
View Structure
11
4738414-4738659
(-)
lysine
4737490-4738240 (-)
dapD
Acetyltransferase; CysE/LacA/LpxA/NodL family
CPS_4493
Single gene
DOOR ID:
1504508
CPS_4493
(dapD)
View Structure
12
4895122-4895314
(+)
MOCO
4896274-4896931 (+)
CPS_4634
Molybdenum cofactor guanylyltransferase (7)
CPS_4634
Operon
DOOR ID:
60776
CPS_4633
(moaA)
,
CPS_4634
View Structure
Genome:
Colwellia psychrerythraea 34H
(
NC_003910.7
);
Phylum:
Gammaproteobacteria
a:13:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_003910.7";i:2;s:30:"Colwellia psychrerythraea 34H ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:11:"68041-68171";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:11:"65522-67703";i:10;s:1:"-";i:11;s:8:"CPS_0067";i:12;s:23:"TonB-dependent receptor";i:13;s:8:"CPS_0067";i:14;s:6:"Operon";i:15;s:5:"59977";i:16;s:35:"CPS_0064;CPS_0065;CPS_0066;CPS_0067";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_003910.7";i:2;s:30:"Colwellia psychrerythraea 34H ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"253282-253379";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"253518-255495";i:10;s:1:"+";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:8:"CPS_0250";i:14;s:6:"Operon";i:15;s:5:"60020";i:16;s:53:"CPS_0250(thiC);CPS_0251;CPS_0252(thiS);CPS_0253(thiG)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_003910.7";i:2;s:30:"Colwellia psychrerythraea 34H ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"807375-807459";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:13:"807551-809372";i:10;s:1:"+";i:11;s:8:"CPS_0788";i:12;s:46:"Thermostable serine protease; subtilase family";i:13;s:8:"CPS_0788";i:14;s:11:"single gene";i:15;s:7:"1504523";i:16;s:8:"CPS_0788";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_003910.7";i:2;s:30:"Colwellia psychrerythraea 34H ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1167801-1168012";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1168296-1168926";i:10;s:1:"+";i:11;s:8:"CPS_1146";i:12;s:25:"Putative membrane protein";i:13;s:8:"CPS_1146";i:14;s:11:"Single gene";i:15;s:7:"1504751";i:16;s:8:"CPS_1146";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_003910.7";i:2;s:30:"Colwellia psychrerythraea 34H ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1185608-1186048";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1183703-1185572";i:10;s:1:"-";i:11;s:4:"btuB";i:12;s:35:"TonB-dependent vitamin B12 receptor";i:13;s:8:"CPS_1162";i:14;s:11:"Single gene";i:15;s:7:"1504738";i:16;s:14:"CPS_1162(btuB)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_003910.7";i:2;s:30:"Colwellia psychrerythraea 34H ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1189539-1189693";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1188679-1189510";i:10;s:1:"-";i:11;s:8:"CPS_1166";i:12;s:55:"Putative vitamin B12 transport ATP-binding protein BtuD";i:13;s:8:"CPS_1166";i:14;s:6:"Operon";i:15;s:5:"60182";i:16;s:42:"CPS_1163;CPS_1164(cobO2);CPS_1165;CPS_1166";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_003910.7";i:2;s:30:"Colwellia psychrerythraea 34H ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1401691-1401790";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:15:"1401867-1402878";i:10;s:1:"+";i:11;s:4:"add1";i:12;s:55:"Adenine deaminase (ADE) (Adenine aminohydrolase) (AAH)";i:13;s:8:"CPS_1359";i:14;s:11:"Single gene";i:15;s:7:"1502958";i:16;s:14:"CPS_1359(add1)";i:17;s:116:"adenine catabolic process [GO:0006146]; hypoxanthine salvage [GO:0043103]; nucleotide metabolic process [GO:0009117]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_003910.7";i:2;s:30:"Colwellia psychrerythraea 34H ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1642430-1642525";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"1642011-1642413";i:10;s:1:"-";i:11;s:8:"CPS_1596";i:12;s:24:"Conserved domain protein";i:13;s:8:"CPS_1596";i:14;s:11:"single gene";i:15;s:7:"1503515";i:16;s:8:"CPS_1596";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_003910.7";i:2;s:30:"Colwellia psychrerythraea 34H ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2074691-2074911";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"2075059-2076430";i:10;s:1:"+";i:11;s:4:"lysC";i:12;s:14:"Aspartokinase ";i:13;s:8:"CPS_2004";i:14;s:11:"Single gene";i:15;s:7:"1503754";i:16;s:14:"CPS_2004(lysC)";i:17;s:105:"lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_003910.7";i:2;s:30:"Colwellia psychrerythraea 34H ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4612611-4612693";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"4612998-4614786";i:10;s:1:"-";i:11;s:8:"CPS_4378";i:12;s:23:"Uncharacterized protein";i:13;s:8:"CPS_4378";i:14;s:11:"single gene";i:15;s:7:"1504326";i:16;s:8:"CPS_4378";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_003910.7";i:2;s:30:"Colwellia psychrerythraea 34H ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4738414-4738659";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"4737490-4738240";i:10;s:1:"-";i:11;s:4:"dapD";i:12;s:45:"Acetyltransferase; CysE/LacA/LpxA/NodL family";i:13;s:8:"CPS_4493";i:14;s:11:"Single gene";i:15;s:7:"1504508";i:16;s:14:"CPS_4493(dapD)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_003910.7";i:2;s:30:"Colwellia psychrerythraea 34H ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4895122-4895314";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"4896274-4896931";i:10;s:1:"+";i:11;s:8:"CPS_4634";i:12;s:43:"Molybdenum cofactor guanylyltransferase (7)";i:13;s:8:"CPS_4634";i:14;s:6:"Operon";i:15;s:5:"60776";i:16;s:23:"CPS_4633(moaA);CPS_4634";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}}
