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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
157529-157684
(+)
glmS
157875-159678 (+)
glmS
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)
BCE_0158
Single gene
DOOR ID:
1499690
BCE_0158
(glmS)
View Structure
2
500911-501020
(+)
TPP
501092-501899 (+)
thiM
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
BCE_0486
Operon
DOOR ID:
58985
BCE_0486
(thiM)
,
BCE_0487
(thiE)
View Structure
3
506312-506413
(+)
TPP
506513-506834 (+)
BCE_0490
BCE_0490
Operon
DOOR ID:
58986
BCE_0490,
BCE_0491,
BCE_0492,
BCE_0493
View Structure
4
828777-828889
(+)
TPP
829134-829830 (+)
BCE_0795
Aminopyrimidine aminohydrolase
BCE_0795
Operon
DOOR ID:
59043
BCE_0795,
BCE_0796,
BCE_0797,
BCE_0798,
BCE_0799
(tenI)
,
BCE_0800
(goxB)
,
BCE_0801,
BCE_0802
(thiG)
,
BCE_0803,
BCE_0804
(thiD)
View Structure
5
828950-829052
(+)
TPP
829134-829830 (+)
BCE_0795
Aminopyrimidine aminohydrolase
BCE_0795
Operon
DOOR ID:
59043
BCE_0795,
BCE_0796,
BCE_0797,
BCE_0798,
BCE_0799
(tenI)
,
BCE_0800
(goxB)
,
BCE_0801,
BCE_0802
(thiG)
,
BCE_0803,
BCE_0804
(thiD)
View Structure
6
836949-837096
(+)
ydaO-yuaA
837189-837576 (+)
BCE_0805
BCE_0805
Operon
DOOR ID:
59044
BCE_0805,
BCE_0806,
BCE_0807
View Structure
7
838085-838230
(+)
ydaO-yuaA
838327-838432 (+)
BCE_0808
BCE_0808
Single gene
DOOR ID:
1499963
BCE_0808
View Structure
8
1425344-1425508
(-)
yybP-ykoY
1424458-1425253 (-)
BCE_1422
BCE_1422
Single gene
DOOR ID:
1500268
BCE_1422
View Structure
9
1576743-1576882
(+)
FMN
1577044-1577623 (+)
BCE_1606
Riboflavin transporter
BCE_1606
Single gene
DOOR ID:
1500356
BCE_1606
View Structure
10
1900016-1900162
(+)
ydaO-yuaA
1900306-1902133 (+)
BCE_1966
Membrane protein; putative
BCE_1966
Single gene
DOOR ID:
1500508
BCE_1966
View Structure
11
2504738-2504843
(+)
TPP
2504966-2505656 (+)
tenA
Aminopyrimidine aminohydrolase
BCE_2629
Single gene
DOOR ID:
1500854
BCE_2629
(tenA)
View Structure
12
3159877-3160019
(+)
ydaO-yuaA
3160116-3160260 (+)
BCE_3383
BCE_3383
Single gene
DOOR ID:
1501256
BCE_3383
View Structure
13
3791525-3791713
(+)
cobalamin
3791840-3794129 (+)
metE
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)
BCE_4053
Single gene
DOOR ID:
1501551
BCE_4053
(metE)
View Structure
14
3897823-3897966
(+)
FMN
3898274-3899387 (+)
ribD
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
BCE_4179
Operon
DOOR ID:
59660
BCE_4179
(ribD)
,
BCE_4180
(ribE)
,
BCE_4181
(ribBA)
,
BCE_4182
(ribH)
View Structure
15
4579444-4579545
(+)
TPP
4579630-4580299 (+)
BCE_4967
BCE_4967
Single gene
DOOR ID:
1501938
BCE_4967
View Structure
16
4815585-4815644
(+)
fluoride
4815689-4816103 (+)
BCE_5216
Putative fluoride ion transporter CrcB 1
BCE_5216
Operon
DOOR ID:
59879
BCE_5216
(ccrB)
,
BCE_5217
(ccrB)
View Structure
17
4930804-4930919
(-)
TPP
4928929-4930690 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
BCE_5341
Single gene
DOOR ID:
1502103
BCE_5341
(thiC)
View Structure
Genome:
Bacillus cereus ATCC 10987
(
NC_003909.8
);
Phylum:
Firmicutes
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glutamine metabolic process [GO:0006541]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_003909.8";i:2;s:26:"Bacillus cereus ATCC 10987";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"500911-501020";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"501092-501899";i:10;s:1:"+";i:11;s:4:"thiM";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:8:"BCE_0486";i:14;s:6:"Operon";i:15;s:5:"58985";i:16;s:29:"BCE_0486(thiM);BCE_0487(thiE)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_003909.8";i:2;s:26:"Bacillus cereus ATCC 10987";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"506312-506413";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"506513-506834";i:10;s:1:"+";i:11;s:8:"BCE_0490";i:12;s:0:"";i:13;s:8:"BCE_0490";i:14;s:6:"Operon";i:15;s:5:"58986";i:16;s:35:"BCE_0490;BCE_0491;BCE_0492;BCE_0493";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_003909.8";i:2;s:26:"Bacillus cereus ATCC 10987";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"828777-828889";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:6:"Tandem";i:9;s:13:"829134-829830";i:10;s:1:"+";i:11;s:8:"BCE_0795";i:12;s:31:"Aminopyrimidine aminohydrolase ";i:13;s:8:"BCE_0795";i:14;s:6:"Operon";i:15;s:5:"59043";i:16;s:113:"BCE_0795;BCE_0796;BCE_0797;BCE_0798;BCE_0799(tenI);BCE_0800(goxB);BCE_0801;BCE_0802(thiG);BCE_0803;BCE_0804(thiD)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_003909.8";i:2;s:26:"Bacillus cereus ATCC 10987";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"828950-829052";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:6:"Tandem";i:9;s:13:"829134-829830";i:10;s:1:"+";i:11;s:8:"BCE_0795";i:12;s:31:"Aminopyrimidine aminohydrolase ";i:13;s:8:"BCE_0795";i:14;s:6:"Operon";i:15;s:5:"59043";i:16;s:113:"BCE_0795;BCE_0796;BCE_0797;BCE_0798;BCE_0799(tenI);BCE_0800(goxB);BCE_0801;BCE_0802(thiG);BCE_0803;BCE_0804(thiD)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_003909.8";i:2;s:26:"Bacillus cereus ATCC 10987";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"836949-837096";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:13:"837189-837576";i:10;s:1:"+";i:11;s:8:"BCE_0805";i:12;s:0:"";i:13;s:8:"BCE_0805";i:14;s:6:"Operon";i:15;s:5:"59044";i:16;s:26:"BCE_0805;BCE_0806;BCE_0807";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_003909.8";i:2;s:26:"Bacillus cereus ATCC 10987";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"838085-838230";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:13:"838327-838432";i:10;s:1:"+";i:11;s:8:"BCE_0808";i:12;s:0:"";i:13;s:8:"BCE_0808";i:14;s:11:"Single gene";i:15;s:7:"1499963";i:16;s:8:"BCE_0808";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_003909.8";i:2;s:26:"Bacillus cereus ATCC 10987";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1425344-1425508";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1424458-1425253";i:10;s:1:"-";i:11;s:8:"BCE_1422";i:12;s:0:"";i:13;s:8:"BCE_1422";i:14;s:11:"Single gene";i:15;s:7:"1500268";i:16;s:8:"BCE_1422";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_003909.8";i:2;s:26:"Bacillus cereus ATCC 10987";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1576743-1576882";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1577044-1577623";i:10;s:1:"+";i:11;s:8:"BCE_1606";i:12;s:22:"Riboflavin transporter";i:13;s:8:"BCE_1606";i:14;s:11:"Single gene";i:15;s:7:"1500356";i:16;s:8:"BCE_1606";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_003909.8";i:2;s:26:"Bacillus cereus ATCC 10987";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1900016-1900162";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"1900306-1902133";i:10;s:1:"+";i:11;s:8:"BCE_1966";i:12;s:26:"Membrane protein; putative";i:13;s:8:"BCE_1966";i:14;s:11:"Single gene";i:15;s:7:"1500508";i:16;s:8:"BCE_1966";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_003909.8";i:2;s:26:"Bacillus cereus ATCC 10987";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2504738-2504843";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2504966-2505656";i:10;s:1:"+";i:11;s:4:"tenA";i:12;s:31:"Aminopyrimidine aminohydrolase ";i:13;s:8:"BCE_2629";i:14;s:11:"Single gene";i:15;s:7:"1500854";i:16;s:14:"BCE_2629(tenA)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_003909.8";i:2;s:26:"Bacillus cereus ATCC 10987";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"3159877-3160019";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"3160116-3160260";i:10;s:1:"+";i:11;s:8:"BCE_3383";i:12;s:0:"";i:13;s:8:"BCE_3383";i:14;s:11:"Single gene";i:15;s:7:"1501256";i:16;s:8:"BCE_3383";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_003909.8";i:2;s:26:"Bacillus cereus ATCC 10987";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"3791525-3791713";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3791840-3794129";i:10;s:1:"+";i:11;s:4:"metE";i:12;s:172:"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)";i:13;s:8:"BCE_4053";i:14;s:11:"Single gene";i:15;s:7:"1501551";i:16;s:14:"BCE_4053(metE)";i:17;s:44:"methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_003909.8";i:2;s:26:"Bacillus cereus ATCC 10987";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"3897823-3897966";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"3898274-3899387";i:10;s:1:"+";i:11;s:4:"ribD";i:12;s:140:"Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]";i:13;s:8:"BCE_4179";i:14;s:6:"Operon";i:15;s:5:"59660";i:16;s:60:"BCE_4179(ribD);BCE_4180(ribE);BCE_4181(ribBA);BCE_4182(ribH)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_003909.8";i:2;s:26:"Bacillus cereus ATCC 10987";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"4579444-4579545";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4579630-4580299";i:10;s:1:"+";i:11;s:8:"BCE_4967";i:12;s:0:"";i:13;s:8:"BCE_4967";i:14;s:11:"Single gene";i:15;s:7:"1501938";i:16;s:8:"BCE_4967";i:17;s:0:"";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_003909.8";i:2;s:26:"Bacillus cereus ATCC 10987";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"4815585-4815644";i:6;s:1:"+";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"4815689-4816103";i:10;s:1:"+";i:11;s:8:"BCE_5216";i:12;s:40:"Putative fluoride ion transporter CrcB 1";i:13;s:8:"BCE_5216";i:14;s:6:"Operon";i:15;s:5:"59879";i:16;s:29:"BCE_5216(ccrB);BCE_5217(ccrB)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:17;a:19:{i:0;i:17;i:1;s:11:"NC_003909.8";i:2;s:26:"Bacillus cereus ATCC 10987";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"4930804-4930919";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4928929-4930690";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:8:"BCE_5341";i:14;s:11:"Single gene";i:15;s:7:"1502103";i:16;s:14:"BCE_5341(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}}