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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
837066-837234
(+)
FMN
837402-838005 (+)
ribE
Riboflavin synthase alpha chain
XCC0695
Operon
DOOR ID:
58117
XCC0695
(ribE)
,
XCC0696
(ribA)
,
XCC0697
(ribH)
,
XCC0698
(nusB)
,
XCC0699
(thiL)
View Structure
2
900180-900294
(-)
SAH
898706-900149 (-)
sahH
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
XCC0752
Single gene
DOOR ID:
1497974
XCC0752
(sahH)
View Structure
3
1299786-1299900
(-)
glycine
1296758-1299686 (-)
gcvP
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
XCC1112
Single gene
DOOR ID:
1498083
XCC1112
(gcvP)
View Structure
4
2322589-2322664
(-)
fluoride
2321180-2322503 (-)
XCC1977
XCC1977
Single gene
DOOR ID:
1498386
XCC1977
View Structure
5
3379652-3379772
(-)
SAM
3378548-3379580 (-)
metA
Homoserine O-succinyltransferase (HST) (6) (Homoserine transsuccinylase) (HTS)
XCC2857
Operon
DOOR ID:
58546
XCC2855,
XCC2856
(metB)
,
XCC2857
(metA)
View Structure
6
3630967-3631190
(-)
cobalamin
3628974-3630855 (-)
btuB
Outer membrane receptor for transport of vitamin B
XCC3067
Single gene
DOOR ID:
1498781
XCC3067
(btuB)
View Structure
7
3943304-3943402
(-)
TPP
3941311-3943189 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
XCC3319
Single gene
DOOR ID:
1498899
XCC3319
(thiC)
View Structure
8
4836448-4836619
(+)
yybP-ykoY
4836623-4837205 (+)
XCC4075
Putative manganese efflux pump MntP
XCC4075
Single gene
DOOR ID:
1499224
XCC4075
View Structure
Genome:
Xanthomonas campestris pv. campestris str. ATCC 33913
(
NC_003902.1
);
Phylum:
Gammaproteobacteria
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