RiboswitchDB

Genome: Brucella melitensis bv. 1 str. 16M chromosome II (NC_003318.1); Phylum: Alphaproteobacteria

S.No.

Riboswitch Location and Strand

Riboswitch class

Downstream gene location and Strand

Downstream gene name/gene product description

Locus_tag of downstream gene

Single gene/within operon (According to DOOR database)

Operon details (List of genes within operon and their Locus_tag)

Predicted Structure

1

559738-559970 (+)

cobalamin

560169-561204 (+)

BMEII0535

Iron(Iii) dicitrate-binding periplasmic protein

Operon

DOOR ID: 52547

BMEII0534,
BMEII0535,
BMEII0536,
BMEII0537

2

584390-584474 (+)

glycine

584621-585725 (+)

gcvT

Aminomethyltransferase (0)

Operon

DOOR ID: 52552

BMEII0559 (gcvT),
BMEII0560,
BMEII0561

3

623584-623747 (-)

FMN

623030-623507 (-)

ribH

6;7-dimethyl-8-ribityllumazine synthase 2 (DMRL synthase 2) (LS 2) (Lumazine synthase 2) (8) (Type II lumazine synthase)

Single gene

DOOR ID: 1477411

BMEII0589 (ribH)

4

972913-973126 (-)

cobalamin

972339-972573 (-)

BMEII0932

Glutaredoxin

Operon

DOOR ID: 52629

BMEII0929 (nrdF),
BMEII0930,
BMEII0931 (nrdI),
BMEII0932

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";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_003318.1";i:2;s:48:"Brucella melitensis bv. 1 str. 16M chromosome II";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"584390-584474";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:13:"584621-585725";i:10;s:1:"+";i:11;s:4:"gcvT";i:12;s:26:"Aminomethyltransferase (0)";i:13;s:9:"BMEII0559";i:14;s:6:"Operon";i:15;s:5:"52552";i:16;s:35:"BMEII0559(gcvT);BMEII0560;BMEII0561";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure
";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_003318.1";i:2;s:48:"Brucella melitensis bv. 1 str. 16M chromosome II";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"623584-623747";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"623030-623507";i:10;s:1:"-";i:11;s:4:"ribH";i:12;s:120:"6;7-dimethyl-8-ribityllumazine synthase 2 (DMRL synthase 2) (LS 2) (Lumazine synthase 2) (8) (Type II lumazine synthase)";i:13;s:9:"BMEII0589";i:14;s:11:"Single gene";i:15;s:7:"1477411";i:16;s:15:"BMEII0589(ribH)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure
";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_003318.1";i:2;s:48:"Brucella melitensis bv. 1 str. 16M chromosome II";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"972913-973126";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"972339-972573";i:10;s:1:"-";i:11;s:9:"BMEII0932";i:12;s:12:"Glutaredoxin";i:13;s:9:"BMEII0932";i:14;s:6:"Operon";i:15;s:5:"52629";i:16;s:51:"BMEII0929(nrdF);BMEII0930;BMEII0931(nrdI);BMEII0932";i:17;s:35:"cell redox homeostasis [GO:0045454]";i:18;s:15:"View Structure
";}}