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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
300112-300282
(-)
TPP
299065-300073 (-)
tbpA
Thiamine-binding periplasmic protein
BMEI0285
Operon
DOOR ID:
52087
BMEI0283,
BMEI0284
(thiP)
,
BMEI0285
(tbpA)
View Structure
2
307058-307104
(-)
glutamine
305457-306894 (+)
BMEI0292
Pyruvate kinase (0)
BMEI0292
Operon
DOOR ID:
52088
BMEI0291,
BMEI0292
View Structure
3
679010-679238
(+)
cobalamin
679457-681257 (+)
BMEI0657
Metal chelate outer membrane receptor
BMEI0657
Operon
DOOR ID:
52158
BMEI0657,
BMEI0658,
BMEI0659,
BMEI0660
View Structure
4
717368-717605
(+)
cobalamin
717667-717844 (+)
BMEI0691
BMEI0691
Single gene
DOOR ID:
1476601
BMEI0691
View Structure
5
1664140-1664219
(+)
sam-alpha
1664300-1665506 (+)
BMEI1617
O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase)
BMEI1617
Single gene
DOOR ID:
1477001
BMEI1617
View Structure
6
1774842-1774948
(+)
TPP
1774995-1775910 (+)
BMEI1732
Phosphomethylpyrimidine kinase / hydroxymethylpyrimidine kinase
BMEI1732
Operon
DOOR ID:
52369
BMEI1732,
BMEI1733,
BMEI1734,
BMEI1735
(thiG)
,
BMEI1736
(thiE)
,
BMEI1737,
BMEI1738,
BMEI1739
View Structure
Genome:
Brucella melitensis bv. 1 str. 16M chromosome I
(
NC_003317.1
);
Phylum:
Alphaproteobacteria
a:7:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_003317.1";i:2;s:47:"Brucella melitensis bv. 1 str. 16M chromosome I";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"300112-300282";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"299065-300073";i:10;s:1:"-";i:11;s:4:"tbpA";i:12;s:36:"Thiamine-binding periplasmic protein";i:13;s:8:"BMEI0285";i:14;s:6:"Operon";i:15;s:5:"52087";i:16;s:38:"BMEI0283;BMEI0284(thiP);BMEI0285(tbpA)";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_003317.1";i:2;s:47:"Brucella melitensis bv. 1 str. 16M chromosome I";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"307058-307104";i:6;s:1:"-";i:7;s:9:"glutamine";i:8;s:0:"";i:9;s:13:"305457-306894";i:10;s:1:"+";i:11;s:8:"BMEI0292";i:12;s:19:"Pyruvate kinase (0)";i:13;s:8:"BMEI0292";i:14;s:6:"Operon";i:15;s:5:"52088";i:16;s:17:"BMEI0291;BMEI0292";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_003317.1";i:2;s:47:"Brucella melitensis bv. 1 str. 16M chromosome I";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"679010-679238";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"679457-681257";i:10;s:1:"+";i:11;s:8:"BMEI0657";i:12;s:37:"Metal chelate outer membrane receptor";i:13;s:8:"BMEI0657";i:14;s:6:"Operon";i:15;s:5:"52158";i:16;s:35:"BMEI0657;BMEI0658;BMEI0659;BMEI0660";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_003317.1";i:2;s:47:"Brucella melitensis bv. 1 str. 16M chromosome I";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"717368-717605";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"717667-717844";i:10;s:1:"+";i:11;s:8:"BMEI0691";i:12;s:0:"";i:13;s:8:"BMEI0691";i:14;s:11:"Single gene";i:15;s:7:"1476601";i:16;s:8:"BMEI0691";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_003317.1";i:2;s:47:"Brucella melitensis bv. 1 str. 16M chromosome I";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1664140-1664219";i:6;s:1:"+";i:7;s:9:"sam-alpha";i:8;s:0:"";i:9;s:15:"1664300-1665506";i:10;s:1:"+";i:11;s:8:"BMEI1617";i:12;s:76:"O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase) ";i:13;s:8:"BMEI1617";i:14;s:11:"Single gene";i:15;s:7:"1477001";i:16;s:8:"BMEI1617";i:17;s:104:"'de novo' L-methionine biosynthetic process [GO:0071266]; homocysteine biosynthetic process [GO:0071268]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_003317.1";i:2;s:47:"Brucella melitensis bv. 1 str. 16M chromosome I";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1774842-1774948";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1774995-1775910";i:10;s:1:"+";i:11;s:8:"BMEI1732";i:12;s:64:"Phosphomethylpyrimidine kinase / hydroxymethylpyrimidine kinase ";i:13;s:8:"BMEI1732";i:14;s:6:"Operon";i:15;s:5:"52369";i:16;s:83:"BMEI1732;BMEI1733;BMEI1734;BMEI1735(thiG);BMEI1736(thiE);BMEI1737;BMEI1738;BMEI1739";i:17;s:42:"thiamine biosynthetic process [GO:0009228]";i:18;s:15:"View Structure ";}}