Genome: Listeria innocua Clip11262 (NC_003212.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 172398-172500 (+)SAM172585-174160 (+)lin0182

Lin0182 protein		lin0182Single gene

DOOR ID: 1468028		lin0182 View Structure
2 327217-327336 (-)SAM326284-327106 (-)lin0313

Lipoprotein		lin0313Operon

DOOR ID: 48623		lin0310,
lin0311,
lin0312,
lin0313		 View Structure
3 354876-354981 (+)TPP355067-355742 (+)lin0340

Aminopyrimidine aminohydrolase 		lin0340Operon

DOOR ID: 48629		lin0340,
lin0341,
lin0342,
lin0343 (thiE)		 View Structure
4 610055-610156 (-)purine608665-609961 (-)lin0582

Lin0582 protein		lin0582Single gene

DOOR ID: 1468196		lin0582 View Structure
5 636814-636914 (-)SAM635427-636705 (-)lin0604

Lin0604 protein		lin0604Operon

DOOR ID: 48675		lin0603 (metX),
lin0604		 View Structure
6 755734-755929 (+)glmS756014-757820 (+)lin0734

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)		lin0734Single gene

DOOR ID: 1468254		lin0734 View Structure
7 817272-817469 (-)lysine815719-817180 (-)lin0791

Lin0791 protein		lin0791Single gene

DOOR ID: 1468283		lin0791 View Structure
8 871748-871844 (+)SAM871938-873042 (+)lin0838

Lin0838 protein		lin0838Single gene

DOOR ID: 1468312		lin0838 View Structure
9 896853-896900 (+)PreQ1896905-897394 (+)lin0860

Lin0860 protein		lin0860Single gene

DOOR ID: 1468320		lin0860 View Structure
10 1013063-1013165 (+)yybP-ykoY1013263-1014031 (+)lin0990

Lin0990 protein		lin0990Single gene

DOOR ID: 1468357		lin0990 View Structure
11 1132425-1132616 (+)cobalamin1132769-1133654 (-)lin1114

Regulatory protein similar to Salmonella typhimurium PocR protein		lin1114Single gene

DOOR ID: 1468403		lin1114 View Structure
12 1150697-1150840 (+)cobalamin1151258-1152398 (+)lin1135

lin1135Single gene

DOOR ID: 1468404		lin1135 View Structure
13 1167419-1167603 (+)cobalamin1167762-1169121 (+)lin1154

Cobyrinate a;c-diamide synthase (1) (Cobyrinic acid a;c-diamide synthetase)		lin1154Operon

DOOR ID: 48781		lin1154,
lin1155 (cobD),
lin1156 (cbiC),
lin1157 (cbiD),
lin1158,
lin1159,
lin1160,
lin1161,
lin1162,
lin1163,
lin1164,
lin1165,
lin1166,
lin1167,
lin1168,
lin1169,
lin1170,
lin1171,
lin1172		 View Structure
14 1379626-1379717 (+)glycine1379800-1380889 (+)gcvT

Aminomethyltransferase (0) (Glycine cleavage system T protein)		lin1385Operon

DOOR ID: 48826		lin1385 (gcvT),
lin1386,
lin1387		 View Structure
15 1469226-1469336 (-)TPP1468597-1469158 (-)lin1468

Lin1468 protein		lin1468Single gene

DOOR ID: 1468490		lin1468 View Structure
16 1772354-1772462 (-)SAM1771046-1772246 (-)lin1773

S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)		lin1773Single gene

DOOR ID: 1468562		lin1773 View Structure
17 1790086-1790192 (-)SAM1787681-1789979 (-)lin1789

5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)		lin1789Operon

DOOR ID: 48919		lin1786,
lin1787,
lin1788,
lin1789		 View Structure
18 2013245-2013345 (-)purine2012584-2013163 (-)lin1998

Xanthine phosphoribosyltransferase (XPRTase) (2)		lin1998Operon

DOOR ID: 48961		lin1997,
lin1998		 View Structure
19 2074874-2074996 (-)FMN2074072-2074684 (-)lin2059

Riboflavin transporter		lin2059Single gene

DOOR ID: 1468646		lin2059 View Structure
20 2538136-2538254 (-)SAM2537023-2538046 (-)lin2514

Methionine import ATP-binding protein MetN 2 		lin2514Operon

DOOR ID: 49075		lin2512,
lin2513,
lin2514		 View Structure
21 2855167-2855334 (-)ykoK2852311-2854882 (-)lin2836

Lin2836 protein		lin2836Operon

DOOR ID: 49147		lin2834,
lin2835,
lin2836		 View Structure