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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
128117-128216
(-)
TPP
127101-128085 (-)
tbpA
Putative ABC-type thiamine transport system;periplasmic component
STY0125
Operon
DOOR ID:
47130
STY0123
(thiQ)
,
STY0124
(thiP)
,
STY0125
(tbpA)
View Structure
2
835072-835216
(+)
MOCO
836214-836727 (+)
moaB
Molybdenum cofactor biosynthesis protein B
STY0837
Operon
DOOR ID:
47262
STY0836
(moaA)
,
STY0837
(moaB)
,
STY0838
(moaC)
,
STY0839
(moaD)
,
STY0840
(moaE)
View Structure
3
1853536-1853637
(+)
yybP-ykoY
1853694-1854315 (+)
STY1963
Probable manganese efflux pump MntP
STY1963
Single gene
DOOR ID:
1466031
STY1963
View Structure
4
2070472-2070647
(-)
cobalamin
2068996-2070421 (-)
cbiA
STY2240
Operon
DOOR ID:
47478
STY2239
(cbiB)
,
STY2240
(cbiA)
View Structure
5
2207460-2207556
(-)
TPP
2206630-2207428 (-)
thiD
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
STY2376
Operon
DOOR ID:
47497
STY2374,
STY2375
(thiD)
,
STY2376
View Structure
6
3216113-3216311
(-)
FMN
3215353-3216007 (-)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
STY3373
Single gene
DOOR ID:
1466488
STY3373
(ribB)
View Structure
7
3569899-3570062
(+)
TPP
3570147-3572043 (+)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
STY3721
Operon
DOOR ID:
47744
STY3721
(thiC)
,
STY3722
(thiE)
,
STY3723
(thiF)
,
STY3724
(thiS)
,
STY3725
(thiG)
,
STY3726
(thiH)
View Structure
8
3603157-3603350
(-)
cobalamin
3601246-3603091 (-)
btuB
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
STY3744
Operon
DOOR ID:
47750
STY3743
(murI)
,
STY3744
(btuB)
View Structure
9
4557927-4557971
(+)
mini-ykkC
4557992-4558310 (+)
sugE
STY4698
Single gene
DOOR ID:
1466919
STY4698
(sugE)
View Structure
10
4655557-4655669
(+)
Mg sensor
4655765-4658474 (+)
mgtA
STY4796
Single gene
DOOR ID:
1466959
STY4796
(mgtA)
View Structure
Genome:
Salmonella enterica subsp. enterica serovar Typhi str. CT18
(
NC_003198.1
);
Phylum:
Gammaproteobacteria
a:11:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_003198.1";i:2;s:59:"Salmonella enterica subsp. enterica serovar Typhi str. CT18";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"128117-128216";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"127101-128085";i:10;s:1:"-";i:11;s:4:"tbpA";i:12;s:65:"Putative ABC-type thiamine transport system;periplasmic component";i:13;s:7:"STY0125";i:14;s:6:"Operon";i:15;s:5:"47130";i:16;s:41:"STY0123(thiQ);STY0124(thiP);STY0125(tbpA)";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_003198.1";i:2;s:59:"Salmonella enterica subsp. enterica serovar Typhi str. CT18";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"835072-835216";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:13:"836214-836727";i:10;s:1:"+";i:11;s:4:"moaB";i:12;s:42:"Molybdenum cofactor biosynthesis protein B";i:13;s:7:"STY0837";i:14;s:6:"Operon";i:15;s:5:"47262";i:16;s:69:"STY0836(moaA);STY0837(moaB);STY0838(moaC);STY0839(moaD);STY0840(moaE)";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_003198.1";i:2;s:59:"Salmonella enterica subsp. enterica serovar Typhi str. CT18";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1853536-1853637";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1853694-1854315";i:10;s:1:"+";i:11;s:7:"STY1963";i:12;s:35:"Probable manganese efflux pump MntP";i:13;s:7:"STY1963";i:14;s:11:"Single gene";i:15;s:7:"1466031";i:16;s:7:"STY1963";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_003198.1";i:2;s:59:"Salmonella enterica subsp. enterica serovar Typhi str. CT18";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2070472-2070647";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2068996-2070421";i:10;s:1:"-";i:11;s:4:"cbiA";i:12;s:0:"";i:13;s:7:"STY2240";i:14;s:6:"Operon";i:15;s:5:"47478";i:16;s:27:"STY2239(cbiB);STY2240(cbiA)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_003198.1";i:2;s:59:"Salmonella enterica subsp. enterica serovar Typhi str. CT18";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2207460-2207556";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2206630-2207428";i:10;s:1:"-";i:11;s:4:"thiD";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:7:"STY2376";i:14;s:6:"Operon";i:15;s:5:"47497";i:16;s:29:"STY2374;STY2375(thiD);STY2376";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_003198.1";i:2;s:59:"Salmonella enterica subsp. enterica serovar Typhi str. CT18";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3216113-3216311";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"3215353-3216007";i:10;s:1:"-";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:7:"STY3373";i:14;s:11:"Single gene";i:15;s:7:"1466488";i:16;s:13:"STY3373(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_003198.1";i:2;s:59:"Salmonella enterica subsp. enterica serovar Typhi str. CT18";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3569899-3570062";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3570147-3572043";i:10;s:1:"+";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:7:"STY3721";i:14;s:6:"Operon";i:15;s:5:"47744";i:16;s:83:"STY3721(thiC);STY3722(thiE);STY3723(thiF);STY3724(thiS);STY3725(thiG);STY3726(thiH)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_003198.1";i:2;s:59:"Salmonella enterica subsp. enterica serovar Typhi str. CT18";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3603157-3603350";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3601246-3603091";i:10;s:1:"-";i:11;s:4:"btuB";i:12;s:89:"Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)";i:13;s:7:"STY3744";i:14;s:6:"Operon";i:15;s:5:"47750";i:16;s:27:"STY3743(murI);STY3744(btuB)";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_003198.1";i:2;s:59:"Salmonella enterica subsp. enterica serovar Typhi str. CT18";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4557927-4557971";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"4557992-4558310";i:10;s:1:"+";i:11;s:4:"sugE";i:12;s:0:"";i:13;s:7:"STY4698";i:14;s:11:"Single gene";i:15;s:7:"1466919";i:16;s:13:"STY4698(sugE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_003198.1";i:2;s:59:"Salmonella enterica subsp. enterica serovar Typhi str. CT18";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4655557-4655669";i:6;s:1:"+";i:7;s:9:"Mg sensor";i:8;s:0:"";i:9;s:15:"4655765-4658474";i:10;s:1:"+";i:11;s:4:"mgtA";i:12;s:0:"";i:13;s:7:"STY4796";i:14;s:11:"Single gene";i:15;s:7:"1466959";i:16;s:13:"STY4796(mgtA)";i:17;s:0:"";i:18;s:15:"View Structure ";}}